A modelling approach for correcting reporting delays in disease surveillance data

被引:48
|
作者
Bastos, Leonardo S. [1 ]
Economou, Theodoros [2 ]
Gomes, Marcelo F. C. [1 ]
Villela, Daniel A. M. [1 ]
Coelho, Flavio C. [3 ]
Cruz, Oswaldo G. [1 ]
Stoner, Oliver [2 ]
Bailey, Trevor [2 ]
Codeco, Claudia T. [1 ]
机构
[1] Fundacao Oswaldo Cruz, Sci Comp Program, BR-21040360 Rio De Janeiro, Brazil
[2] Univ Exeter, Dept Math, Exeter, Devon, England
[3] Getulio Vargas Fdn, Sch Appl Math, Rio De Janeiro, Brazil
关键词
Bayesian hierarchical model; dengue; INLA; reporting delay; SARI; INFERENCE; OUTBREAK;
D O I
10.1002/sim.8303
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
One difficulty for real-time tracking of epidemics is related to reporting delay. The reporting delay may be due to laboratory confirmation, logistical problems, infrastructure difficulties, and so on. The ability to correct the available information as quickly as possible is crucial, in terms of decision making such as issuing warnings to the public and local authorities. A Bayesian hierarchical modelling approach is proposed as a flexible way of correcting the reporting delays and to quantify the associated uncertainty. Implementation of the model is fast due to the use of the integrated nested Laplace approximation. The approach is illustrated on dengue fever incidence data in Rio de Janeiro, and severe acute respiratory infection data in the state of Parana, Brazil.
引用
收藏
页码:4363 / 4377
页数:15
相关论文
共 50 条
  • [1] A nowcasting framework for correcting for reporting delays in malaria surveillance
    Menkir, Tigist F.
    Cox, Horace
    Poirier, Canelle
    Saul, Melanie
    Jones-Weekes, Sharon
    Clementson, Collette
    de Salazar, Pablo M.
    Santillana, Mauricio
    Buckee, Caroline O.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2021, 17 (11)
  • [2] Modelling reporting delays for outbreak detection in infectious disease data
    Noufaily, Angela
    Ghebremichael-Weldeselassie, Yonas
    Enki, Doyo Gragn
    Garthwaite, Paul
    Andrews, Nick
    Charlett, Andre
    Farrington, Paddy
    [J]. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY, 2015, 178 (01) : 205 - 222
  • [3] A SIMPLE CORRECTION OF AIDS SURVEILLANCE DATA FOR REPORTING DELAYS
    ROSENBERG, PS
    [J]. JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES AND HUMAN RETROVIROLOGY, 1990, 3 (01): : 49 - 54
  • [4] A note on the grouping of surveillance data when adjusting for reporting delays
    Law, MG
    Kaldor, JM
    [J]. AMERICAN JOURNAL OF EPIDEMIOLOGY, 1997, 146 (07) : 592 - 595
  • [5] Multivariate modelling of infectious disease surveillance data
    Paul, M.
    Held, L.
    Toschke, A. M.
    [J]. STATISTICS IN MEDICINE, 2008, 27 (29) : 6250 - 6267
  • [6] Detection of Infectious Disease Outbreaks From Laboratory Data With Reporting Delays
    Noufaily, Angela
    Farrington, Paddy
    Garthwaite, Paul
    Enki, Doyo Gragn
    Andrews, Nick
    Charlett, Andre
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2016, 111 (514) : 488 - 499
  • [7] Disease surveillance and data collection issues in epidemic modelling
    Solomon, PJ
    Isham, VS
    [J]. STATISTICAL METHODS IN MEDICAL RESEARCH, 2000, 9 (03) : 259 - 277
  • [9] Modeling reporting delays and reporting corrections in cancer registry data
    Midthune, DN
    Fay, MP
    Clegg, LX
    Feuer, EJ
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2005, 100 (469) : 61 - 70
  • [10] A Hierarchical Framework for Correcting Under-Reporting in Count Data
    Stoner, Oliver
    Economou, Theo
    Marques da Silva, Gabriela Drummond
    [J]. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2019, 114 (528) : 1481 - 1492