Phase separation by the SARS-CoV-2 nucleocapsid protein: Consensus and open questions

被引:41
|
作者
Cascarina, Sean M. [1 ]
Ross, Eric D. [1 ]
机构
[1] Colorado State Univ, Dept Biochem & Mol Biol, Ft Collins, CO 80523 USA
关键词
PRION-LIKE DOMAINS; N-PROTEIN; RNA; INTERFERONS; DISEASE; FORMS;
D O I
10.1016/j.jbc.2022.101677
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In response to the recent SARS-CoV-2 pandemic, a number of labs across the world have reallocated their time and resources to better our understanding of the virus. For some viruses, including SARS-CoV-2, viral proteins can undergo phase separation: a biophysical process often related to the partitioning of protein and RNA into membraneless organelles in vivo. In this review, we discuss emerging observations of phase separation by the SARS-CoV-2 nucleocapsid (N) protein -an essential viral protein required for viral replication-and the possible in vivo functions that have been proposed for N protein phase separation, including viral replication, viral genomic RNA packaging, and modulation of host-cell response to infection. Additionally, since a relatively large number of studies examining SARS-CoV-2 N-protein phase separation have been published in a short span of time, we take advantage of this situation to compare results from similar experiments across studies. Our evaluation highlights potential strengths and pitfalls of drawing conclusions from a single set of experiments, as well as the value of publishing overlapping scientific observations performed simultaneously by multiple labs.
引用
收藏
页数:17
相关论文
共 50 条
  • [41] Identification of conserved immunogenic peptides of SARS-CoV-2 nucleocapsid protein
    Verma, Jigyasa
    Kaushal, Neha
    Manish, Manish
    Subbarao, Naidu
    Shakirova, Venera
    Martynova, Ekaterina
    Liu, Rongzeng
    Hamza, Shaimaa
    Rizvanov, Albert A.
    Khaiboullina, Svetlana F.
    Baranwal, Manoj
    [J]. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023,
  • [42] Energetic and frustration analysis of SARS-CoV-2 nucleocapsid protein mutations
    Haque, Shafiul
    Khatoon, Fatima
    Ashgar, Sami S.
    Faidah, Hani
    Bantun, Farkad
    Jalal, Naif A.
    Qashqari, Fadi S. I.
    Kumar, Vijay
    [J]. BIOTECHNOLOGY AND GENETIC ENGINEERING REVIEWS, 2023,
  • [43] Impact of mutations on the stability of SARS-CoV-2 nucleocapsid protein structure
    Muradyan, Nelli
    Arakelov, Vahram
    Sargsyan, Arsen
    Paronyan, Adrine
    Arakelov, Grigor
    Nazaryan, Karen
    [J]. SCIENTIFIC REPORTS, 2024, 14 (01):
  • [44] Single-molecule spectroscopy of the SARS-CoV-2 nucleocapsid protein
    Cubuk, Jasmine
    Incicco, Jeremias
    Alston, Jhullian J.
    Hall, Kathleen B.
    Stuchell-Brereton, Melissa D.
    Soranno, Andrea
    [J]. BIOPHYSICAL JOURNAL, 2023, 122 (03) : 200A - 200A
  • [45] Nucleocapsid protein binding DNA aptamers for detection of SARS-COV-2
    Neff, Charles P.
    Cikara, Mile
    Geiss, Brian J.
    Caltagirone, G. Thomas
    Liao, Albert
    Atif, Shaikh M.
    Macdonald, Bradley
    Schaden, Richard
    [J]. CURRENT RESEARCH IN BIOTECHNOLOGY, 2023, 5
  • [46] Structural biology of SARS-CoV-2 nucleocapsid
    Kippes, Oliver
    Thorn, Andrea
    Santoni, Gianluca
    [J]. CRYSTALLOGRAPHY REVIEWS, 2022, 28 (01) : 21 - 38
  • [47] N-terminally truncated nucleocapsid protein of SARS-CoV-2 as a better serological marker than whole nucleocapsid protein in evaluating the immunogenicity of inactivated SARS-CoV-2
    Yue, Lei
    Cao, Han
    Xie, Tianhong
    Long, Runxiang
    Li, Hua
    Yang, Ting
    Yan, Min
    Xie, Zhongping
    [J]. JOURNAL OF MEDICAL VIROLOGY, 2021, 93 (03) : 1732 - 1738
  • [48] Comparison of the SARS-CoV-2 spike protein ELISA and the Abbott Architect SARS-CoV-2 IgG nucleocapsid protein assays for detection of antibodies
    Wadhwa, Ashutosh
    Yin, Sherry
    Freeman, Brandi
    Hershow, Rebecca B.
    Killerby, Marie
    Yousaf, Anna R.
    Lester, Sandra
    Mills, Lisa
    Buono, Sean A.
    Pomeroy, Mary
    Owusu, Daniel
    Chu, Victoria T.
    Tate, Jacqueline E.
    Bhattacharyya, Sanjib
    Hall, Patricia
    Thornburg, Natalie J.
    Kirking, Hannah L.
    [J]. PLOS ONE, 2021, 16 (07):
  • [49] Targeting liquid–liquid phase separation of SARS-CoV-2 nucleocapsid protein promotes innate antiviral immunity by elevating MAVS activity
    Shuai Wang
    Tong Dai
    Ziran Qin
    Ting Pan
    Feng Chu
    Lingfeng Lou
    Long Zhang
    Bing Yang
    Huizhe Huang
    Huasong Lu
    Fangfang Zhou
    [J]. Nature Cell Biology, 2021, 23 : 718 - 732
  • [50] Electrostatic features for nucleocapsid proteins of SARS-CoV and SARS-CoV-2
    Guo, Wenhan
    Xie, Yixin
    Lopez-Hernandez, Alan E.
    Sun, Shengjie
    Li, Lin
    [J]. MATHEMATICAL BIOSCIENCES AND ENGINEERING, 2021, 18 (03) : 2372 - 2383