Pathway for Mn-cluster oxidation by tyrosine-Z in the S2 state of photosystem II

被引:114
|
作者
Narzi, Daniele [1 ]
Bovi, Daniele [1 ]
Guidoni, Leonardo [1 ,2 ]
机构
[1] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[2] Univ Aquila, Dipartimento Sci Fis & Chim, I-67100 Laquila, Italy
基金
欧洲研究理事会;
关键词
QM/MM; photosynthesis; molecular dynamics; reaction mechanisms; OXYGEN-EVOLVING COMPLEX; O BOND FORMATION; WATER OXIDATION; MANGANESE COMPLEX; STRUCTURAL STABILITY; CRYSTAL-STRUCTURE; CATALYTIC SITE; PROTON RELEASE; MN4CA CLUSTER; MECHANISM;
D O I
10.1073/pnas.1401719111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Water oxidation in photosynthetic organisms occurs through the five intermediate steps S-0-S-4 of the Kok cycle in the oxygen evolving complex of photosystem II (PSII). Along the catalytic cycle, four electrons are subsequently removed from the Mn4CaO5 core by the nearby tyrosine Tyr-Z, which is in turn oxidized by the chlorophyll special pair P680, the photo-induced primary donor in PSII. Recently, two Mn4CaO5 conformations, consistent with the S-2 state (namely, S-2(A) and S-2(B) models) were suggested to exist, perhaps playing a different role within the S-2-to-S-3 transition. Here we report multiscale ab initio density functional theory plus U simulations revealing that upon such oxidation the relative thermodynamic stability of the two previously proposed geometries is reversed, the S-2(B) state becoming the leading conformation. In this latter state a proton coupled electron transfer is spontaneously observed at similar to 100 fs at room temperature dynamics. Upon oxidation, the Mn cluster, which is tightly electronically coupled along dynamics to the Tyr-Z tyrosyl group, releases a proton from the nearby W1 water molecule to the close Asp-61 on the femtosecond timescale, thus undergoing a conformational transition increasing the available space for the subsequent coordination of an additional water molecule. The results can help to rationalize previous spectroscopic experiments and confirm, for the first time to our knowledge, that the water-splitting reaction has to proceed through the S-2(B) conformation, providing the basis for a structural model of the S-3 state.
引用
收藏
页码:8723 / 8728
页数:6
相关论文
共 50 条
  • [31] Effects of azide on the S2 state EPR signals from Photosystem II
    Haddy, A
    Kimel, RA
    Thomas, R
    PHOTOSYNTHESIS RESEARCH, 2000, 63 (01) : 35 - 45
  • [32] Theoretical Study on the Role of Ca2+ at the S2 State in Photosystem II
    Yang, Jingxiu
    Hatakeyama, Makoto
    Ogata, Koji
    Nakamura, Shinichiro
    Li, Can
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (49): : 14215 - 14222
  • [33] Structural assignments around Tyrosine-Z in photosystem II using site-directed mutagenesis and structural modelling.
    Styring, S
    Svensson, B
    Sayre, RT
    Mamedov, F
    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V, 1998, : 1267 - 1272
  • [34] Structural changes correlated with magnetic spin state isomorphism in the S2 state of the Mn4CaO5 cluster in the oxygen-evolving complex of photosystem II
    Chatterjee, Ruchira
    Han, Guangye
    Kern, Jan
    Gul, Sheraz
    Fuller, Franklin D.
    Garachtchenko, Anna
    Young, Iris D.
    Weng, Tsu-Chien
    Nordlund, Dennis
    Alonso-Mori, Roberto
    Bergmann, Uwe
    Sokaras, Dimosthenis
    Hatakeyama, Makoto
    Yachandra, Vittal K.
    Yano, Junko
    CHEMICAL SCIENCE, 2016, 7 (08) : 5236 - 5248
  • [35] The S2 to S3 transition for water oxidation in PSII (photosystem II), revisited
    Siegbahn, Per E. M.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2018, 20 (35) : 22926 - 22931
  • [36] W-band EPR studies of Mn-cluster in the S0 and S2 states of Cyanobacterial single crystals.
    Kawamori, A
    Shen, JR
    Furukawa, K
    Matsuoka, E
    Kato, T
    PLANT AND CELL PHYSIOLOGY, 2004, 45 : S81 - S81
  • [37] Assessment of the manganese cluster's oxidation state via photoactivation of photosystem II microcrystals
    Cheah, Mun Hon
    Zhang, Miao
    Shevela, Dmitry
    Mamedov, Fikret
    Zouni, Athina
    Messinger, Johannes
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 117 (01) : 141 - 145
  • [38] Orientation of the tetranuclear manganese cluster and tyrosine Z in the O2-evolving complex of photosystem II:: An EPR study of the S2Yz• state in oriented acetate-inhibited photosystem II membranes
    Lakshmi, KV
    Eaton, SS
    Eaton, GR
    Brudvig, GW
    BIOCHEMISTRY, 1999, 38 (39) : 12758 - 12767
  • [39] EPR evidence for an S=7/2 intermediate state from the Mn4 cluster of photosystem II
    Sanakis, Y
    Ioannidis, N
    Sioros, G
    Petrouleas, V
    JOURNAL OF INORGANIC BIOCHEMISTRY, 2001, 86 (01) : 418 - 418
  • [40] HEISENBERG-MODEL OF TETRAMERIC MANGANESE CLUSTER OF S2 CENTER OF PHOTOSYSTEM-II
    BELINSKII, MI
    CHEMICAL PHYSICS, 1994, 179 (01) : 1 - 22