Pathway for Mn-cluster oxidation by tyrosine-Z in the S2 state of photosystem II

被引:114
|
作者
Narzi, Daniele [1 ]
Bovi, Daniele [1 ]
Guidoni, Leonardo [1 ,2 ]
机构
[1] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[2] Univ Aquila, Dipartimento Sci Fis & Chim, I-67100 Laquila, Italy
基金
欧洲研究理事会;
关键词
QM/MM; photosynthesis; molecular dynamics; reaction mechanisms; OXYGEN-EVOLVING COMPLEX; O BOND FORMATION; WATER OXIDATION; MANGANESE COMPLEX; STRUCTURAL STABILITY; CRYSTAL-STRUCTURE; CATALYTIC SITE; PROTON RELEASE; MN4CA CLUSTER; MECHANISM;
D O I
10.1073/pnas.1401719111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Water oxidation in photosynthetic organisms occurs through the five intermediate steps S-0-S-4 of the Kok cycle in the oxygen evolving complex of photosystem II (PSII). Along the catalytic cycle, four electrons are subsequently removed from the Mn4CaO5 core by the nearby tyrosine Tyr-Z, which is in turn oxidized by the chlorophyll special pair P680, the photo-induced primary donor in PSII. Recently, two Mn4CaO5 conformations, consistent with the S-2 state (namely, S-2(A) and S-2(B) models) were suggested to exist, perhaps playing a different role within the S-2-to-S-3 transition. Here we report multiscale ab initio density functional theory plus U simulations revealing that upon such oxidation the relative thermodynamic stability of the two previously proposed geometries is reversed, the S-2(B) state becoming the leading conformation. In this latter state a proton coupled electron transfer is spontaneously observed at similar to 100 fs at room temperature dynamics. Upon oxidation, the Mn cluster, which is tightly electronically coupled along dynamics to the Tyr-Z tyrosyl group, releases a proton from the nearby W1 water molecule to the close Asp-61 on the femtosecond timescale, thus undergoing a conformational transition increasing the available space for the subsequent coordination of an additional water molecule. The results can help to rationalize previous spectroscopic experiments and confirm, for the first time to our knowledge, that the water-splitting reaction has to proceed through the S-2(B) conformation, providing the basis for a structural model of the S-3 state.
引用
收藏
页码:8723 / 8728
页数:6
相关论文
共 50 条
  • [1] An FTIR study on the structure of the oxygen-evolving Mn-cluster of Photosystem II in different spin forms of the S2 state
    Kouichi Onoda
    Hiroyuki Mino
    Yorinao Inoue
    Takumi Noguchi
    Photosynthesis Research, 2000, 63 : 47 - 57
  • [2] An FTIR study on the structure of the oxygen-evolving Mn-cluster of Photosystem II in different spin forms of the S2 state
    Onoda, K
    Mino, H
    Inoue, Y
    Noguchi, T
    PHOTOSYNTHESIS RESEARCH, 2000, 63 (01) : 47 - 57
  • [3] The EPR study of tyrosine-Z and manganese cluster in the Ca2+-depleted photosystem II
    Mino, H
    Ono, T
    Kawamori, A
    PHOTOSYNTHESIS: MECHANISMS AND EFFECTS, VOLS I-V, 1998, : 1407 - 1410
  • [4] 1H Hyperfine Interactions in the Mn-Cluster of Photosystem II in the S2 State Detected by Hyperfine Sublevel Correlation Spectroscopy
    Martinez, Jesus I.
    Yruela, Inmaculada
    Picorel, Rafael
    Alonso, Pablo J.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2010, 114 (46): : 15345 - 15353
  • [5] How to evaluate the structure of a tetranuclear Mn cluster from magnetic and EXAFS data:: Case of the S2-state Mn-cluster in photosystem II
    Hasegawa, K
    Ono, T
    Inoue, Y
    Kusunoki, M
    BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN, 1999, 72 (05) : 1013 - 1023
  • [6] Role of the Photosystem II as an Environment in the Oxidation Free Energy of the Mn Cluster from S1 to S2
    Takahashi, Hideaki
    Suzuoka, Daiki
    Sakuraba, Shun
    Morita, Akihiro
    JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (33): : 7081 - 7091
  • [7] Photoelectrochemical water oxidation improved by pyridine N-oxide as a mimic of tyrosine-Z in photosystem II
    Zhu, Yong
    Liu, Guoquan
    Zhao, Ran
    Gao, Hua
    Li, Xiaona
    Sun, Licheng
    Li, Fei
    CHEMICAL SCIENCE, 2022, 13 (17) : 4955 - 4961
  • [8] BIOCHEMICAL-EVIDENCE FOR HISTIDINE OXIDATION IN PHOTOSYSTEM-II DEPLETED OF THE MN-CLUSTER FOR O-2-EVOLUTION
    ONO, T
    INOUE, Y
    FEBS LETTERS, 1991, 278 (02) : 183 - 186
  • [9] SPECTROSCOPIC EVIDENCE FOR THE SYMMETRICAL LOCATION OF TYROSINE-D AND TYROSINE-Z IN PHOTOSYSTEM-II
    KOULOUGLIOTIS, D
    TANG, XS
    DINER, BA
    BRUDVIG, GW
    BIOCHEMISTRY, 1995, 34 (09) : 2850 - 2856
  • [10] Substrate water exchange in the S2 state of photosystem II is dependent on the conformation of the Mn4Ca cluster
    de Lichtenberg, Casper
    Messinger, Johannes
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2020, 22 (23) : 12894 - 12908