Gene data classification using Map Reduce based linear SVM

被引:1
|
作者
Abinash, M. J. [1 ]
Vasudevan, V. [1 ]
机构
[1] Kalasalingam Acad Res & Educ, Dept Informat Technol, Krishnan Kovil 626126, India
来源
关键词
big data; gene expression; Hadoop; Map Reduce; MRBFS; MRBSVM; FEATURE-SELECTION; CANCER;
D O I
10.1002/cpe.5497
中图分类号
TP31 [计算机软件];
学科分类号
081202 ; 0835 ;
摘要
Nowadays, the microarray classification for various diseases is a challenging one. The real disadvantage of sequence of gene information is the "scourge of dimensionality issue"; this frustrates the meaningful data of dataset and, what is more, prompts computational unsteadiness. Accordingly, choosing pertinent qualities is a basic in microarray information investigation. The majority of the existing plans utilize a two-stage form: selection of features/extraction pursued by order. In this paper, a factual test, ie, forward selection depending upon map reduce, is suggested to choose the significant highlights. Subsequently, the selection of relevant features, ie, linear-based Support Vector Machine (SVM) using map reduce based classifier, is likewise suggested to order the microarray information. These calculations are effectively executed on Hadoop system, and relative investigation is finished utilizing different datasets.
引用
收藏
页数:9
相关论文
共 50 条
  • [41] Hardware Accelerator for Facial Expression Classification Using Linear SVM
    Saurav, Sumeet
    Singh, Sanjay
    Saini, Ravi
    Saini, Anil K.
    ADVANCES IN SIGNAL PROCESSING AND INTELLIGENT RECOGNITION SYSTEMS (SIRS-2015), 2016, 425 : 39 - 50
  • [42] Feature Selection in Breast Cancer Gene Expression Data Using KAO and AOA with SVM Classification
    Yaqoob, Abrar
    Verma, Navneet Kumar
    JOURNAL OF MEDICAL SYSTEMS, 2025, 49 (01)
  • [43] Selection and Classification of Gene Expression Data Using a MF-GA-TS-SVM Approach
    Alberto Luis, Hernandez-Montiel
    Edmundo, Bonilla-Huerta
    Roberto, Morales-Caporal
    Antonio Jose, Guevara-Garcia
    INTELLIGENT COMPUTING IN BIOINFORMATICS, 2014, 8590 : 300 - 308
  • [44] Eigengene-based linear discriminant model for tumor classification using gene expression microarray data
    Shen, Ronglai
    Ghosh, Debashis
    Chinnaiyan, Arul
    Meng, Zhaoling
    BIOINFORMATICS, 2006, 22 (21) : 2635 - 2642
  • [45] Stellar data classification using SVM with wavelet transformation
    Guo, P
    Xing, F
    Jiang, YG
    2004 IEEE INTERNATIONAL CONFERENCE ON SYSTEMS, MAN & CYBERNETICS, VOLS 1-7, 2004, : 5894 - 5899
  • [46] MRPR: A Map Reduce solution for prototype reduction in big data classification
    Triguero, Isaac
    Peralta, Daniel
    Bacardit, Jaume
    Garcia, Salvador
    Herrera, Francisco
    NEUROCOMPUTING, 2015, 150 : 331 - 345
  • [47] Data Selection Using Decision Tree for SVM Classification
    Lopez-Chau, Asdrubal
    Lopez-Garcia, Lourdes
    Cervantes, Jair
    Li, Xiaoou
    Yu, Wen
    2012 IEEE 24TH INTERNATIONAL CONFERENCE ON TOOLS WITH ARTIFICIAL INTELLIGENCE (ICTAI 2012), VOL 1, 2012, : 742 - 749
  • [48] FPGA Based Implementation of Linear SVM for Facial Expression Classification
    Saurav, Sumeet
    Saini, Ravi
    Singh, Sanjay
    2018 INTERNATIONAL CONFERENCE ON ADVANCES IN COMPUTING, COMMUNICATIONS AND INFORMATICS (ICACCI), 2018, : 766 - 773
  • [49] A comparison of SVM-based criteria in evolutionary method for gene selection and classification of microarray data
    Debnath, Rameswar
    Takahashi, Haruhisa
    World Academy of Science, Engineering and Technology, 2010, 46 : 406 - 410
  • [50] PSO based feature selection of gene for cancer classification using SVM-RFE
    Kavitha, K. R.
    Nair, Harishankar U.
    Akhil, M. C.
    2018 INTERNATIONAL CONFERENCE ON ADVANCES IN COMPUTING, COMMUNICATIONS AND INFORMATICS (ICACCI), 2018, : 1012 - 1016