Data Deposition and Annotation at the Worldwide Protein Data Bank

被引：86

作者：

Dutta, Shuchismita ^{[1
]}

Burkhardt, Kyle ^{[1
]}

Young, Jasmine ^{[1
]}

Swaminathan, Ganesh J. ^{[2
]}

Matsuura, Takanori ^{[3
]}

Henrick, Kim ^{[2
]}

Nakamura, Haruki ^{[3
]}

Berman, Helen M. ^{[1
]}

机构：

[1] Rutgers State Univ, RCSB PDB, Dept Chem & Chem Biol, Piscataway, NJ 08854 USA

[2] EMBL Outstn Hinxton, Macromol Struct Database European Bioinformat Ins, Cambridge CB10 1SD, England

[3] Osaka Univ, PDBj, Inst Prot Res, Suita, Osaka 5650871, Japan

来源：

MOLECULAR BIOTECHNOLOGY | 2009年 / 42卷 / 01期

基金：

美国国家科学基金会; 日本科学技术振兴机构; 英国惠康基金; 英国生物技术与生命科学研究理事会; 英国医学研究理事会;

关键词：

Protein Data Bank (PDB); wwPDB; Deposition; Annotation; Validation; E-MSD; SYSTEM; VALIDATION; MANAGEMENT; RESOURCE; ARCHIVE; CACTVS;

D O I：

10.1007/s12033-008-9127-7

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers managing this global archive. These data are used by scientists, researchers, bioinformatics specialists, educators, students, and general audiences to understand biological phenomenon at a molecular level. Analysis of this structural data also inspires and facilitates new discoveries in science. This chapter describes the tools and methods currently used for deposition, processing, and release of data in the PDB. References to future enhancements are also included.

引用

页码：1 / 13

页数：13

共 50 条

[21] The protein data bank
J.L. Sussman
E.E. Abola
D. Lin
J. Jiang
N.O. Manning
J. Prilusky
Genetica, 1999, 106 : 149 - 158
[22] THE PROTEIN DATA BANK
不详
COMPUTING IN SCIENCE & ENGINEERING, 2010, 12 (05) : 10 - 10
[23] Improving the quality of 3D cryo-EM structure data at the Worldwide Protein Data Bank
Flatt, Justin
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2022, 78 : A139 - A139
[24] RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB
Bittrich, Sebastian
Rose, Yana
Segura, Joan
Lowe, Robert
Westbrook, John D.
Duarte, Jose M.
Burley, Stephen K.
BIOINFORMATICS, 2022, 38 (05) : 1452 - 1454
[25] The Protein Data Bank and lessons in data management
Bourne, PE
Westbrook, J
Berman, HM
BRIEFINGS IN BIOINFORMATICS, 2004, 5 (01) : 23 - 30
[26] Analysis of crystallization data in the Protein Data Bank
Kirkwood, Jobic
Hargreavcs, David
O'Kecfe, Simon
Wilson, Julie
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 : 1228 - 1234
[27] WORLDWIDE DATA BANK ON SETTLEMENTS PLANNED IN SPAIN + ARKISYST
CROSBIE, MJ
ARCHITECTURE-THE AIA JOURNAL, 1983, 72 (08): : 59 - 59
[28] Protein data bank deposits
Sussman, JL
SCIENCE, 1998, 282 (5396) : 1993 - 1993
[29] The Protein Data Bank and me
Yokoyama, Shigeyuki
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2011, 18 (12) : 1307 - 1307
[30] Role of the Protein Data Bank
Sarah Crunkhorn
Nature Reviews Drug Discovery, 2019, 18 (2) : 98 - 98

← 1 2 3 4 5 →