Handling Big Data in Medical Imaging: Iterative Reconstruction with Large-Scale Automated Parallel Computation

被引:0
|
作者
Lee, Jae H. [1 ]
Yao, Yushu [2 ]
Shrestha, Uttam [3 ]
Gullberg, Grant T. [4 ]
Seo, Youngho [3 ]
机构
[1] Univ N Carolina, Chapel Hill, NC 27599 USA
[2] NERSC Ctr, Berkeley, CA 94704 USA
[3] Univ Calif San Francisco, Dept Radiol & Biomed Imaging, Phys Res Lab, San Francisco, CA 94143 USA
[4] Lawrence Berkeley Natl Lab, Struct Biol & Imaging Dept, Div Life Sci, Berkeley, CA 94704 USA
关键词
D O I
暂无
中图分类号
TL [原子能技术]; O571 [原子核物理学];
学科分类号
0827 ; 082701 ;
摘要
The primary goal of this project is to implement the iterative statistical image reconstruction algorithm, in this case maximum likelihood expectation maximum (MLEM) used for dynamic cardiac single photon emission computed tomography, on Spark/GraphX. This involves porting the algorithm to run on large-scale parallel computing systems. Spark is an easy-to-program software platform that can handle large amounts of data in parallel. GraphX is a graph analytic system running on top of Spark to handle graph and sparse linear algebra operations in parallel. The main advantage of implementing MLEM algorithm in Spark/GraphX is that it allows users to parallelize such computation without any expertise in parallel computing or prior knowledge in computer science. In this paper we demonstrate a successful implementation of MLEM in Spark/GraphX and present the performance gains with the goal to eventually make it useable in clinical setting.
引用
收藏
页数:4
相关论文
共 50 条
  • [41] Distributed Parallel PCA for Modeling and Monitoring of Large-Scale Plant-Wide Processes With Big Data
    Zhu, Jinlin
    Ge, Zhiqiang
    Song, Zhihuan
    IEEE TRANSACTIONS ON INDUSTRIAL INFORMATICS, 2017, 13 (04) : 1877 - 1885
  • [42] Parallel Hybrid Metaheuristics with Distributed Intensification and Diversification for Large-scale Optimization in Big Data Statistical Analysis
    Cho, Wendy K. Tam
    Liu, Yan Y.
    2019 IEEE INTERNATIONAL CONFERENCE ON BIG DATA (BIG DATA), 2019, : 3312 - 3320
  • [43] Going Big: A Large-Scale Study on What Big Data Developers Ask
    Bagherzadeh, Mehdi
    Khatchadourian, Raffi
    ESEC/FSE'2019: PROCEEDINGS OF THE 2019 27TH ACM JOINT MEETING ON EUROPEAN SOFTWARE ENGINEERING CONFERENCE AND SYMPOSIUM ON THE FOUNDATIONS OF SOFTWARE ENGINEERING, 2019, : 432 - 442
  • [44] BIG: a large-scale data integration tool for renal physiology
    Zhao, Yue
    Yang, Chin-Rang
    Raghuram, Viswanathan
    Parulekar, Jaya
    Knepper, Mark A.
    AMERICAN JOURNAL OF PHYSIOLOGY-RENAL PHYSIOLOGY, 2016, 311 (04) : F787 - F792
  • [45] Big Data Collection in Large-Scale Wireless Sensor Networks
    Djedouboum, Asside Christian
    Ari, Ado Adamou Abba
    Gueroui, Abdelhak Mourad
    Mohamadou, Alidou
    Aliouat, Zibouda
    SENSORS, 2018, 18 (12)
  • [46] A Tutorial on Secure Outsourcing of Large-scale Computations for Big Data
    Salinas, Sergio
    Chen, Xuhui
    Ji, Jinlong
    Li, Pan
    IEEE ACCESS, 2016, 4 : 1406 - 1416
  • [47] "Big Data" Versus "Big Brother": On the Appropriate Use of Large-scale Data Collections in Pediatrics
    Currie, Janet
    PEDIATRICS, 2013, 131 : S127 - S132
  • [48] Parallel Multi-splitting Iterative Algorithm for Large-scale Quadratic Programming
    Gao, Leifu
    Zhang, Lu
    2009 INTERNATIONAL CONFERENCE ON MODELING, SIMULATION AND OPTIMIZATION, PROCEEDINGS, 2009, : 206 - 209
  • [49] Robust and parallel scalable iterative solutions for large-scale finite cell analyses
    Jomo, J. N.
    de Prenter, F.
    Elhaddad, M.
    D'Angella, D.
    Verhoosel, C. V.
    Kollmannsberger, S.
    Kirschke, J. S.
    Nuebel, V
    van Brummelen, E. H.
    Rank, E.
    FINITE ELEMENTS IN ANALYSIS AND DESIGN, 2019, 163 : 14 - 30
  • [50] Parallel rendering algorithm for large-scale particles by wrapping surface reconstruction
    Wang, Huawei
    Ai, Zhiwei
    Cao, Yia
    Guofang Keji Daxue Xuebao/Journal of National University of Defense Technology, 2024, 46 (05): : 219 - 227