During the past decades, the general Klein-Gordon-Schrodinger systems have been playing more and more important roles in quantum mechanics. In this paper, the conservative Fourier pseudo-spectral schemes are presented for general Klein-Gordon-Schrodinger system. First, we apply the Fourier pseudo-spectral scheme to spatial derivatives, the Crank-Nicolson and leap-frog schemes to Schrodinger and Klein-Gordon equations in time direction, respectively. We find that the scheme can be decoupled and preserve mass and energy conservation laws. Moreover, the stability and convergence of the scheme are discussed, and it is shown that the scheme is of the accuracy . However, the scheme is nonlinear. Then, we give linearized scheme of the system. We prove that the scheme can be decoupled, linearized and preserve mass and energy conservation laws. The numerical experiments are given to show the correctness of theoretical results and the efficiency of the schemes.