Characterization and. similarity analysis of DNA sequences grounded on a 2-D graphical representation

被引：33
|
作者：
Wang, Jun
Zhang, Yi [1 ]
机构：
[1] Dalian Univ Technol, Dept Appl Math, Dalian 116024, Peoples R China
[2] Dalian Univ Technol, Coll Adv Sci & Technol, Dalian 116024, Peoples R China
来源：
CHEMICAL PHYSICS LETTERS | 2006年 / 423卷 / 1-3期
基金：
中国国家自然科学基金;
关键词：
D O I：
10.1016/j.cplett.2006.03.030
中图分类号：
O64 [物理化学（理论化学）、化学物理学];
学科分类号：
070304 ; 081704 ;
摘要：
Based on the classification of the four nucleic acid bases, we reduce a DNA primary sequence to three (0, 1) sequences: non-A, non-G and non-C. We associate each sequence with a matrix by giving a 2-D graphical representation, and thus obtain a 3-component vector with entries being the sum of the maximal and minimal eigenvalues of the matrices. The introduced vector is applied to characterize and compare the coding sequences of exon 1 of beta-globin gene of 11 different species. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码：50 / 53
页数：4
相关论文
共 50 条
  • [41] Similarity Analysis of DNA Sequences Based on Three 2-D Cumulative Ratio Curves
    Yu, Hong-Jie
    BIO-INSPIRED COMPUTING AND APPLICATIONS, 2012, 6840 : 462 - 469
  • [42] Novel Graphical Representation and Numerical Characterization of DNA Sequences
    Li, Chun
    Fei, Wenchao
    Zhao, Yan
    Yu, Xiaoqing
    APPLIED SCIENCES-BASEL, 2016, 6 (03):
  • [43] Similarity/Dissimilarity Analysis of Protein Sequences by a New Graphical Representation
    Huang, Guohua
    Hu, Jerry
    CURRENT BIOINFORMATICS, 2013, 8 (05) : 539 - 544
  • [44] Graphical Representation of DNA sequences
    Arniker, Swarna Bai
    Kwan, Hon Keung
    2009 IEEE INTERNATIONAL CONFERENCE ON ELECTRO/INFORMATION TECHNOLOGY, 2009, : 309 - 312
  • [45] Novel 2-D graphical representation of proteins
    Randic, M
    Butina, D
    Zupan, J
    CHEMICAL PHYSICS LETTERS, 2006, 419 (4-6) : 528 - 532
  • [46] A novel 2D graphical representation of DNA sequences and its application
    Dai, Qi
    Liu, Xiaoqing
    Wang, Tianming
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2006, 25 (03): : 340 - 344
  • [47] A NEW ADJACENT PAIR 2D GRAPHICAL REPRESENTATION OF DNA SEQUENCES
    Gupta, Manoj Kumar
    Niyogi, Rajdeep
    Misra, Manoj
    JOURNAL OF BIOLOGICAL SYSTEMS, 2013, 21 (01)
  • [48] 2D Graphical Representation of DNA Sequences Based on Variant Map
    Wu, Ruoxue
    Liu, Wenjia
    Mao, Yuyuan
    Zheng, Jeffrey
    IEEE ACCESS, 2020, 8 : 173755 - 173765
  • [49] 2D-dynamic Representation of DNA Sequences as a Graphical Tool in Bioinformatics
    Bielinska-Waz, D.
    Waz, P.
    APPLICATION OF MATHEMATICS IN TECHNICAL AND NATURAL SCIENCES (AMITANS'16), 2016, 1773
  • [50] FRACTAL GRAPHICAL REPRESENTATION AND ANALYSIS OF DNA AND PROTEIN SEQUENCES
    SOLOVYEV, VV
    BIOSYSTEMS, 1993, 30 (1-3) : 137 - 160
12345