Interactions of extracellular DNA with aromatized biochar and protection against degradation by DNase I

被引:32
|
作者
Fang, Jing [1 ,3 ]
Jin, Liang [2 ,3 ]
Meng, Qingkang [2 ,3 ]
Wang, Dengjun [4 ]
Lin, Daohui [2 ]
机构
[1] Zhejiang Univ Sci & Technol, Key Lab Recycling & Ecotreatment Waste Biomass Zh, Hangzhou 310023, Peoples R China
[2] Zhejiang Univ, Dept Environm Sci, Hangzhou 310058, Peoples R China
[3] Zhejiang Gongshang Univ, Sch Environm Sci & Engn, Hangzhou 310012, Peoples R China
[4] US EPA, Oak Ridge Inst Sci & Educ ORISE, Ada, OK 74820 USA
来源
基金
中国国家自然科学基金;
关键词
Aromatized biochar; Extracellular DNA; Sorption; Desorption; Enzymatic degradation; CLAY-MINERALS; PLASMID DNA; CONFORMATIONAL POLYMORPHISM; PYROLYSIS TEMPERATURE; COLLOIDAL PARTICLES; MOLECULAR-STRUCTURE; AQUEOUS-SOLUTION; DYE ADSORPTION; SORPTION; CARBON;
D O I
10.1016/j.jes.2020.08.017
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
With increasing environmental application, biochar (BC) will inevitably interact with and impact environmental behaviors of widely distributed extracellular DNA (eDNA), which however still remains to be studied. Herein, the adsorption/desorption and the degradation by nucleases of eDNA on three aromatized BCs pyrolyzed at 700 degrees C were firstly investigated. The results show that the eDNA was irreversibly adsorbed by aromatized BCs and the pseudo-second-order and Freundlich models accurately described the adsorption process. Increasing solution ionic strength or decreasing pH below 5.0 significantly increased the eDNA adsorption on BCs. However, increasing pH from 5.0 to 10.0 faintly decreased eDNA adsorption. Electrostatic interaction, Ca ion bridge interaction, and ir-ir interaction between eDNA and BC could dominate the eDNA adsorption, while ligand exchange and hydrophobic interactions were minor contributors. The presence of BCs provided a certain protection to eDNA against degradation by DNase I. BC-bound eDNA could be partly degraded by nuclease, while BC-bound nuclease completely lost its degradability. These findings are of fundamental significance for the potential application of biochar in eDNA dissemination management and evaluating the environmental fate of eDNA. (C) 2020 The Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences. Published by Elsevier B.V.
引用
收藏
页码:205 / 216
页数:12
相关论文
共 50 条
  • [41] SEQUENCE SPECIFICITY OF ACTINOMYCIN-D AND NETROPSIN BINDING TO PBR322 DNA ANALYZED BY PROTECTION FROM DNASE-I
    LANE, MJ
    DABROWIAK, JC
    VOURNAKIS, JN
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1983, 80 (11): : 3260 - 3264
  • [42] Inhibiting Neutrophil Extracellular Traps Protects against Ultraviolet B-Induced Skin Damage: Effects of Hochu-ekki-to and DNase I
    Inaba, Issei
    Hiramoto, Keiichi
    Yamate, Yurika
    Morita, Akihiro
    Tsutsumi, Tomonari
    Yasuda, Hiroyuki
    Sato, Eisuke F.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (03)
  • [43] N-trimethylated oligomeric chitosan (TMO) protects plasmid DNA from DNase I degradation and promotes transfection efficiency in vitro
    Florea, BI
    Ravenstijn, PGM
    Junginger, HE
    Borchard, G
    STP PHARMA SCIENCES, 2002, 12 (04): : 243 - 249
  • [44] Binding of DNA from Bacillus subtilis on montmorillonite-humic acids-aluminum or iron hydroxypolymers:: Effects on transformation and protection against DNase
    Crecchio, C
    Ruggiero, P
    Curci, M
    Colombo, C
    Palumbo, G
    Stotzky, G
    SOIL SCIENCE SOCIETY OF AMERICA JOURNAL, 2005, 69 (03) : 834 - 841
  • [45] Novel Role of the Antimicrobial Peptide LL-37 in the Protection of Neutrophil Extracellular Traps against Degradation by Bacterial Nucleases
    Neumann, Ariane
    Voellger, Lena
    Berends, Evelien T. M.
    Molhoek, E. Margo
    Stapels, Daphne A. C.
    Midon, Marika
    Friaes, Ana
    Pingoud, Alfred
    Rooijakkers, Suzan H. M.
    Gallo, Richard L.
    Morgelin, Matthias
    Nizet, Victor
    Naim, Hassan Y.
    von Koeckritz-Blickwede, Maren
    JOURNAL OF INNATE IMMUNITY, 2014, 6 (06) : 860 - 868
  • [46] Extracellular G-quadruplexes and Z-DNA protect biofilms from DNase I, and G-quadruplexes form a DNAzyme with peroxidase activity
    Minero, Gabriel Antonio Salvador
    Mollebjerg, Andreas
    Thiesen, Celine
    Johansen, Mikkel Illemann
    Jorgensen, Nis Pedersen
    Birkedal, Victoria
    Otzen, Daniel Erik
    Meyer, Rikke Louise
    NUCLEIC ACIDS RESEARCH, 2024, 52 (04) : 1575 - 1590
  • [47] DNase I footprinting, DNA bending and in vitro transcription analyses of ClcR and CatR interactions with the clcABD promoter: Evidence of a conserved transcriptional activation mechanism
    McFall, SM
    Klem, TJ
    Fujita, N
    Ishihama, A
    Chakrabarty, AM
    MOLECULAR MICROBIOLOGY, 1997, 24 (05) : 965 - 976
  • [48] SEDIMENT-ADSORBED DNA - STABILITY OF THE COMPLEX, PROTECTION AGAINST ENZYMATIC DEGRADATION AND TRANSFORMATION BY BACILLUS-SUBTILIS
    LORENZ, MG
    AARDEMA, BW
    KRUMBEIN, WE
    WACKERNAGEL, W
    SYSTEMATIC AND APPLIED MICROBIOLOGY, 1984, 5 (02) : 279 - 279
  • [49] Extracellular DNA: A Relevant Plant Damage-Associated Molecular Pattern (DAMP) for Crop Protection Against Pests—A Review
    Noelia I. Ferrusquía-Jiménez
    Gobinath Chandrakasan
    Irineo Torres-Pacheco
    Enrique Rico-Garcia
    Ana A. Feregrino-Perez
    Ramón G. Guevara-González
    Journal of Plant Growth Regulation, 2021, 40 : 451 - 463
  • [50] High release of Candida albicans eDNA as protection for the scaffolding of polymicrobial biofilm formed with Staphylococcus aureus and Streptococcus mutans against the enzymatic activity of DNase I
    Lattar, Santiago M.
    Schneider, Rene Peter
    Eugenio, Vidal Jorge
    Padilla, Gabriel
    BRAZILIAN JOURNAL OF MICROBIOLOGY, 2024, : 3921 - 3932