RT-PCR based diagnosis revealed importance of human group B rotavirus infection in childhood diarrhoea

被引:24
|
作者
Barman, P.
Ghosh, S.
Samajdar, S.
Mitra, U.
Dutta, P.
Bhattacharya, S. K.
Krishnan, T.
Kobayashi, N.
Naik, T. N.
机构
[1] Natl Inst Cholera & Enter Dis, Div Virol, Kolkata 700010, W Bengal, India
[2] Natl Inst Cholera & Enter Dis, Div Clin Med, Kolkata 700010, W Bengal, India
[3] Sapporo Med Univ, Sch Med, Dept Hyg, Sapporo, Hokkaido 060, Japan
关键词
human group B rotavirus; children; PAGE; RT-PCR; nonisotopic dot-blot hybridization; sequence analysis;
D O I
10.1016/j.jcv.2006.02.009
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: Human group B rotavirus was first identified as causative agent of a large outbreak of severe gastroenteritis affecting more than I million people, predominantly adults in China in 1982-1983. In spite of serological evidences for the presence of group B rotavirus in many countries of the world, the virus has been detected only from China, India and Bangladesh, where most of the cases were from adults. Objectives: To ascertain the role of group B rotavirus as an aetiological agent of diarrhoea among children in Kolkata, India. Study design: An active surveillance was conducted for rotavirus infection in children in a leading referral paediatric hospital and a few samples were also collected from adults of another hospital in Kolkata, India over a period of 3 years (2002-2004). After primary screening of rotaviruses by RNA electrophoresis in polyacrylamide get, 200 of 412 samples negative by PAGE were screened by reverse transcription polymerase chain reaction for group B rotaviruses. The group B rotavirus positives samples were also confirmed by dot-blot hybridization. Result: During the study period, we detected 37 (18.5%) sporadic cases of human group B rotavirus infection in children below 3 years of age of which 15 (7.5%) showed mixed infection with group A rotaviruses by RT-PCR. In dot-blot hybridization studies the RNA of all rotavirus positive samples hybridized with the nonisotopic psoralen-biotin labeled total RNA probe generated from a human group B rotavirus CAL-1 strain confirming the samples as group B rotaviruses. Conclusion: The shift in age preference of group B rotavirus infection from adult to children and mixed infection of group B and group A rotaviruses reveals the importance of group B rotavirus as an etiological agent of childhood diarrhoea. Therefore, future vaccination strategy should include both group A and B rotaviruses to control rotavirus diarrhoea. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:222 / 227
页数:6
相关论文
共 50 条
  • [21] A POSSIBLE PATHOPHYSIOLOGICAL ROLE FOR ENDOTHELIN IN HUMAN KIDNEY REVEALED BY QUANTITATIVE FLUORESCENT RT-PCR
    KERET, FE
    DAVENPORT, AP
    JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY, 1995, 6 (03): : 662 - 662
  • [22] Miniature RT-PCR system for diagnosis of RNA-based viruses
    Liao, CS
    Lee, GB
    Liu, HS
    Hsieh, TM
    Luo, CH
    NUCLEIC ACIDS RESEARCH, 2005, 33 (18) : 1 - 7
  • [23] RT-PCR based diagnosis of infectious bursal disease virus in Pakistan
    Zahoor, M. A.
    Hussain, I.
    Mansoor, M. K.
    Masood, S.
    Khan, Q. M.
    POULTRY SCIENCE, 2004, 83 : 109 - 110
  • [24] RT-PCR Based diagnosis of infectious bursal disease virus in Pakistan
    Zahoor, M. A.
    Hussain, I.
    Mansoor, M. K.
    Masood, S.
    Khan, Q. M.
    JOURNAL OF ANIMAL SCIENCE, 2004, 82 : 109 - 110
  • [25] Comparison of SYBR green i real-time RT-PCR with conventional agarose gel-based RT-PCR for the diagnosis of infectious bronchitis virus infection in chickens in Morocco
    Fellahi S.
    Harrak M.E.
    Kuhn J.H.
    Sebbar G.
    Bouaiti E.A.
    Khataby K.
    Fihri O.F.
    Houadfi M.E.
    Ennaji M.M.
    BMC Research Notes, 9 (1)
  • [26] A rapid and specific real time RT-PCR assay for diagnosis of Toscana virus infection
    Brisbarre, Nadege
    Plumet, Sebastien
    Cotteaux-Lautard, Christelle
    Emonet, Sebastien F.
    Pages, Frederic
    Leparc-Goffart, Isabelle
    JOURNAL OF CLINICAL VIROLOGY, 2015, 66 : 107 - 111
  • [27] RT-PCR for the diagnosis of Clostridium difficile infection: the final answer has yet to come
    Visconti, Valeria
    Brunetti, Grazia
    Giordano, Alessandra
    Raponi, Giammarco
    JOURNAL OF CLINICAL PATHOLOGY, 2017, 70 (12) : 1090 - 1091
  • [28] Diagnosis of rotavirus infection in a vaccinated population: Is a less sensitive immunochromatographic method more suitable for detecting wild-type rotavirus than real-time RT-PCR?
    Yandle, Z.
    Coughlan, S.
    Drew, R. J.
    Cleary, J.
    De Gascun, C.
    JOURNAL OF CLINICAL VIROLOGY, 2018, 109 : 19 - 21
  • [29] Laboratory-based molecular test alternatives to RT-PCR for the diagnosis of SARS-CoV-2 infection
    Arevalo-Rodriguez, Ingrid
    Mateos-Haro, Miriam
    Dinnes, Jacqueline
    Ciapponi, Agustin
    Davenport, Clare
    Buitrago-Garcia, Diana
    Bennouna-Dalero, Tayeb
    Roque-Figuls, Marta
    Van den Bruel, Ann
    von Eije, Karin J.
    Emperador, Devy
    Hooft, Lotty
    Spijker, Rene
    Leeflang, Mariska M. G.
    Takwoingi, Yemisi
    Deeks, Jonathan J.
    COCHRANE DATABASE OF SYSTEMATIC REVIEWS, 2024, (10):
  • [30] Detection of feline norovirus using commercial real-time RT-PCR kit for the diagnosis of human norovirus infection
    Takano, Tomomi
    Watanabe, Haruna
    Doki, Tomoyoshi
    Kusuhara, Hajime
    JOURNAL OF VETERINARY MEDICAL SCIENCE, 2021, 83 (05): : 805 - 808