RT-PCR based diagnosis revealed importance of human group B rotavirus infection in childhood diarrhoea

被引:24
|
作者
Barman, P.
Ghosh, S.
Samajdar, S.
Mitra, U.
Dutta, P.
Bhattacharya, S. K.
Krishnan, T.
Kobayashi, N.
Naik, T. N.
机构
[1] Natl Inst Cholera & Enter Dis, Div Virol, Kolkata 700010, W Bengal, India
[2] Natl Inst Cholera & Enter Dis, Div Clin Med, Kolkata 700010, W Bengal, India
[3] Sapporo Med Univ, Sch Med, Dept Hyg, Sapporo, Hokkaido 060, Japan
关键词
human group B rotavirus; children; PAGE; RT-PCR; nonisotopic dot-blot hybridization; sequence analysis;
D O I
10.1016/j.jcv.2006.02.009
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Background: Human group B rotavirus was first identified as causative agent of a large outbreak of severe gastroenteritis affecting more than I million people, predominantly adults in China in 1982-1983. In spite of serological evidences for the presence of group B rotavirus in many countries of the world, the virus has been detected only from China, India and Bangladesh, where most of the cases were from adults. Objectives: To ascertain the role of group B rotavirus as an aetiological agent of diarrhoea among children in Kolkata, India. Study design: An active surveillance was conducted for rotavirus infection in children in a leading referral paediatric hospital and a few samples were also collected from adults of another hospital in Kolkata, India over a period of 3 years (2002-2004). After primary screening of rotaviruses by RNA electrophoresis in polyacrylamide get, 200 of 412 samples negative by PAGE were screened by reverse transcription polymerase chain reaction for group B rotaviruses. The group B rotavirus positives samples were also confirmed by dot-blot hybridization. Result: During the study period, we detected 37 (18.5%) sporadic cases of human group B rotavirus infection in children below 3 years of age of which 15 (7.5%) showed mixed infection with group A rotaviruses by RT-PCR. In dot-blot hybridization studies the RNA of all rotavirus positive samples hybridized with the nonisotopic psoralen-biotin labeled total RNA probe generated from a human group B rotavirus CAL-1 strain confirming the samples as group B rotaviruses. Conclusion: The shift in age preference of group B rotavirus infection from adult to children and mixed infection of group B and group A rotaviruses reveals the importance of group B rotavirus as an etiological agent of childhood diarrhoea. Therefore, future vaccination strategy should include both group A and B rotaviruses to control rotavirus diarrhoea. (c) 2006 Elsevier B.V. All rights reserved.
引用
收藏
页码:222 / 227
页数:6
相关论文
共 50 条
  • [1] Amplification of various genes of human group B rotavirus from stool specimens by RT-PCR
    Sen, A
    Kobayashi, N
    Das, S
    Krishnan, T
    Bhattacharya, SK
    Urasawa, S
    Naik, TN
    JOURNAL OF CLINICAL VIROLOGY, 2000, 17 (03) : 177 - 181
  • [2] RT-PCR in diagnosis of BVDV infection
    Polak, MP
    Zmudzinski, JF
    BULLETIN OF THE VETERINARY INSTITUTE IN PULAWY, 1999, 43 (02) : 113 - 118
  • [3] Detection of Rotavirus Infection in Bovine Calves by RNA-PAGE and RT-PCR
    Basera, Sanjay Singh
    Singh, Rashmi
    Vaid, N.
    Sharma, K.
    Chakravarti, S.
    Malik, Y. P. S.
    INDIAN JOURNAL OF VIROLOGY, 2010, 21 (02): : 144 - 147
  • [4] Detection of Rotavirus Infection in Bovine Calves by RNA-PAGE and RT-PCR
    Sanjay Singh Basera
    Rashmi Singh
    N. Vaid
    K. Sharma
    S. Chakravarti
    Y. P. S. Malik
    Indian Journal of Virology, 2010, 21 : 144 - 147
  • [5] Performance evaluation of gastrointestinal viral ELIte panel multiplex RT-PCR assay for the diagnosis of rotavirus, adenovirus and astrovirus infection
    De Grazia, S.
    Bonura, F.
    Pepe, A.
    Muli, S. Li
    Cappa, V.
    Filizzolo, C.
    Mangiaracina, L.
    Urone, N.
    Giammanco, G. M.
    JOURNAL OF VIROLOGICAL METHODS, 2019, 268 : 48 - 52
  • [6] Determination of genetic anomalies by RT-PCR method, and the importance of prognosis in childhood leukemia
    Komur, M.
    Erbey, F.
    Leblebisatan, G.
    Bayram, I.
    Bolat, H.
    Antmen, B.
    Tanyeli, A.
    FEBS JOURNAL, 2006, 273 : 347 - 347
  • [7] Evaluation of RT-PCR as a tool for diagnosis of secondary dengue virus infection
    Sa-ngasang, A
    Wibulwattanakij, S
    Chanama, S
    O-rapinpatipat, A
    A-nuegoonpipat, A
    Anantapreecha, S
    Sawanpanyalert, P
    Kurane, I
    JAPANESE JOURNAL OF INFECTIOUS DISEASES, 2003, 56 (5-6) : 205 - 209
  • [8] Early diagnosis of SARS Coronavirus infection by real time RT-PCR
    Poon, LLM
    Chan, KH
    Wong, OK
    Yam, WC
    Yuen, KY
    Guan, Y
    Lo, YMD
    Peiris, JSM
    JOURNAL OF CLINICAL VIROLOGY, 2003, 28 (03) : 233 - 238
  • [9] Comparison of electron microscopy, ELISA, real time RT-PCR and insulated isothermal RT-PCR for the detection of Rotavirus group A (RVA) in feces of different animal species
    Soltan, Mohamed A.
    Tsai, Yun-Long
    Lee, Pei-Yu A.
    Tsai, Chuan-Fu
    Chang, Hsiao-Fen G.
    Wang, Hwa-Tang T.
    Wilkes, Rebecca P.
    JOURNAL OF VIROLOGICAL METHODS, 2016, 235 : 99 - 104
  • [10] Comparison of a nucleoprotein gene based RT-PCR with real time RT-PCR for diagnosis of avian influenza in clinical specimens
    Nagarajan, S.
    Murugkar, H. V.
    Tosh, C.
    Behera, P.
    Khandia, R.
    Jain, R.
    Katare, M.
    Syed, Z.
    Tripati, S.
    Dubey, S. C.
    RESEARCH IN VETERINARY SCIENCE, 2012, 93 (01) : 504 - 507