Effects of the translational and rotational degrees of freedom on the hydration of simple solutes

被引:11
|
作者
Mohoric, Tomaz [1 ]
Hribar-Lee, Barbara [1 ]
Vlachy, Vojko [1 ]
机构
[1] Univ Ljubljana, Fac Chem & Chem Technol, SI-1000 Ljubljana, Slovenia
来源
JOURNAL OF CHEMICAL PHYSICS | 2014年 / 140卷 / 18期
关键词
MOLECULAR-DYNAMICS SIMULATIONS; BIOLOGICAL STRUCTURE; MICROWAVE-RADIATION; WATER DYNAMICS; FORCE-FIELD; IONS; PROTEIN; TEMPERATURE; SOLVATION; ALKALI;
D O I
10.1063/1.4875280
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Molecular dynamics simulations with separate thermostats for rotational and translational motion were used to study the effect of these degrees of freedom on the structure of water around model solutes. To describe water molecules we used the SPC/E model. The simplest solute studied here, the hydrophobe, was represented as a Lennard-Jones particle. Since direct interaction between the hydrophobe and water molecules has no angular dependence the influence of the increase of the rotational temperature on the solvation of a hydrophobe is only indirect. In the next step the central solute was assumed to be charged with either a positive or a negative charge to mimic an ion in water. Hence, depending on the charge of the ion, the neighboring water molecules assumed different angular distributions. The principal conclusions of this work are: (i) an increase of the translational temperature always decreases the height of the first peak in the solute-water radial distribution function; (ii) an increase of the rotational temperature yields an increase in the first peak in the solute-water radial distribution function for hydrophobes and cations; (iii) in contrast to this, the solvation peak decreases around ions with sufficiently large negative charge; and (iv) an increase of the rotational temperature affects cations in an opposite way to anions. For this reason complex molecules with a small net charge may not be very sensitive to variation of the rotational temperature. (C) 2014 AIP Publishing LLC.
引用
收藏
页数:7
相关论文
共 50 条
  • [41] VARIATIONAL INTEGRATORS FOR DYNAMICAL SYSTEMS WITH ROTATIONAL DEGREES OF FREEDOM
    Leitz, Thomas
    Ober-Bloebaum, Sina
    Leyendecker, Sigrid
    [J]. 11TH WORLD CONGRESS ON COMPUTATIONAL MECHANICS; 5TH EUROPEAN CONFERENCE ON COMPUTATIONAL MECHANICS; 6TH EUROPEAN CONFERENCE ON COMPUTATIONAL FLUID DYNAMICS, VOLS II - IV, 2014, : 3148 - 3159
  • [42] RELAXATION OF VIBRATIONAL ELECTRONIC AND ROTATIONAL DEGREES OF FREEDOM OF NO MOLECULE
    BAUER, HJ
    SAHM, KF
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1965, 42 (10): : 3400 - &
  • [43] Dynamics of the rotational degrees of freedom in an undercooled crystal of cyanoadamantane
    Affouard, F
    Descamps, M
    [J]. PHASE TRANSITIONS, 2003, 76 (9-10) : 781 - 785
  • [44] KINETIC PHENOMENA IN A KNUDSEN GAS WITH ROTATIONAL DEGREES OF FREEDOM
    BORMAN, VD
    MAKSIMOV, LA
    NIKOLAEV, BI
    TROYAN, VI
    [J]. ZHURNAL EKSPERIMENTALNOI I TEORETICHESKOI FIZIKI, 1973, 64 (02): : 526 - 535
  • [45] THERMODYNAMICS OF A DIATOMIC GAS WITH ROTATIONAL AND VIBRATIONAL DEGREES OF FREEDOM
    ENGHOLM, H
    KREMER, GM
    [J]. INTERNATIONAL JOURNAL OF ENGINEERING SCIENCE, 1994, 32 (08) : 1241 - 1252
  • [46] TRANSPORT CROSS SECTIONS FOR MOLECULES WITH ROTATIONAL DEGREES OF FREEDOM
    STEVENS, GA
    [J]. PHYSICA, 1969, 44 (03): : 401 - &
  • [47] KINETIC MODELS WITH ROTATIONAL DEGREES OF FREEDOM FOR HYBRID METHODS
    Colonia, S.
    Steijl, R.
    Barakos, G.
    [J]. 11TH WORLD CONGRESS ON COMPUTATIONAL MECHANICS; 5TH EUROPEAN CONFERENCE ON COMPUTATIONAL MECHANICS; 6TH EUROPEAN CONFERENCE ON COMPUTATIONAL FLUID DYNAMICS, VOLS V - VI, 2014, : 5774 - 5791
  • [48] Auxetic behavior of crystals from rotational degrees of freedom
    Dmitriev, S. V.
    [J]. FERROELECTRICS, 2007, 349 : 33 - 44
  • [49] The effect of rotational degrees of freedom on solvation of nonpolar solute
    Ogrin, Peter
    Urbic, Tomaz
    [J]. JOURNAL OF MOLECULAR LIQUIDS, 2021, 337
  • [50] A Conforming Triangular Plane Element with Rotational Degrees of Freedom
    Fu, Xiang-Rong
    Yuan, Ming-Wu
    Pu, Chen
    [J]. MATHEMATICAL PROBLEMS IN ENGINEERING, 2015, 2015