Effect of memory in non-Markovian Boolean networks illustrated with a case study: A cell cycling process

被引:6
|
作者
Ebadi, H. [1 ]
Saeedian, M. [2 ]
Ausloos, M. [3 ,4 ]
Jafari, G. R. [5 ,6 ]
机构
[1] Univ Leipzig, Inst Comp Sci, Bioinformat, Hartelstr 16-18, D-04107 Leipzig, Germany
[2] Shahid Beheshti Univ, Dept Phys, GC, Tehran 19839, Iran
[3] Univ Leicester, Sch Business, Univ Rd, Leicester LE1 7RH, Leics, England
[4] GRAPES, Rue Belle Jardiniere 483, B-4031 Angleur, Belgium
[5] Shahid Beheshti Univ, Inst Brain & Cognit Sci, GC, Tehran 19839, Iran
[6] Inst Res Fundamental Sci IPM, Sch Biol Sci, Tehran, Iran
关键词
D O I
10.1209/0295-5075/116/30004
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
The Boolean network is one successful model to investigate discrete complex systems such as the gene interacting phenomenon. The dynamics of a Boolean network, controlled with Boolean functions, is usually considered to be a Markovian (memory-less) process. However, both self-organizing features of biological phenomena and their intelligent nature should raise some doubt about ignoring the history of their time evolution. Here, we extend the Boolean network Markovian approach: we involve the effect of memory on the dynamics. This can be explored by modifying Boolean functions into non-Markovian functions, for example, by investigating the usual non-Markovian threshold function-one of the most applied Boolean functions. By applying the non-Markovian threshold function on the dynamical process of the yeast cell cycle network, we discover a power-law-like memory with a more robust dynamics than the Markovian dynamics. Copyright (C) EPLA, 2016
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页数:5
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