Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

被引：5
|
作者：
Llarena, Ann-Katrin [1 ]
Taboada, Eduardo [2 ]
Rossi, Mirko [1 ]
机构：
[1] Univ Helsinki, Dept Food Hyg & Environm Hlth, Fac Vet Med, Helsinki, Finland
[2] Publ Hlth Agcy Canada, Anim Dis Res Inst, Natl Microbiol Lab Lethbridge, Lethbridge, AB, Canada
来源：
JOURNAL OF CLINICAL MICROBIOLOGY | 2017年 / 55卷 / 05期
关键词：
foodborne pathogens; genome analysis; molecular subtyping; surveillance studies; OUTBREAK; POPULATION; COLONIZATION; DISEASE; HUMANS; GENES; MLST; WGS;
D O I：
10.1128/JCM.00017-17
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
This review describes the current state of knowledge regarding the application of whole-genome sequencing (WGS) in the epidemiology of Campylobacter jejuni, the leading cause of bacterial gastroenteritis worldwide. We describe how WGS has increased our understanding of the evolutionary and epidemiological dynamics of this pathogen and how WGS has the potential to improve surveillance and outbreak detection. We have identified hurdles to the full implementation of WGS in public health settings. Despite these challenges, we think that ample evidence is available to support the benefits of integrating WGS into the routine monitoring of C. jejuni infections and outbreak investigations.
引用
收藏
页码：1269 / 1275
页数：7
相关论文
共 50 条
  • [31] Whole-genome sequencing of bacterial sexually transmitted infections: implications for clinicians
    Seth-Smith, Helena M. B.
    Thomson, Nicholas R.
    [J]. CURRENT OPINION IN INFECTIOUS DISEASES, 2013, 26 (01) : 90 - 98
  • [32] Whole-genome comparative analysis of Campylobacter jejuni strains isolated from patients with diarrhea in northeastern Poland
    Krzysztof Fiedoruk
    Tamara Daniluk
    Dorota Rozkiewicz
    Elzbieta Oldak
    Suhanya Prasad
    Izabela Swiecicka
    [J]. Gut Pathogens, 11
  • [33] Analysis of Campylobacter jejuni Whole-Genome DNA Microarrays: Significance of Prophage and Hypervariable Regions for Discriminating Isolates
    Pittenger, Lauren G.
    Frye, Jonathan G.
    McNerney, Victoria
    Reeves, Jaxk
    Haro, Jovita
    Fedorka-Cray, Paula J.
    Harrison, Mark A.
    Englen, Mark D.
    [J]. FOODBORNE PATHOGENS AND DISEASE, 2012, 9 (05) : 473 - 479
  • [34] Whole-genome sequences of Campylobacter coli and Campylobacter jejuni isolates from rhesus macaques (Macaca mulatta) with and without intestinal disease
    Bacon, Rebecca L.
    Norman, Keri N.
    Nickodem, Colette A.
    Vinasco, Javier A.
    Gray, Stanton B.
    Hodo, Carolyn L.
    Lawhon, Sara D.
    [J]. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (04):
  • [35] Whole-genome comparative analysis of Campylobacter jejuni strains isolated from patients with diarrhea in northeastern Poland
    Fiedoruk, Krzysztof
    Daniluk, Tamara
    Rozkiewicz, Dorota
    Oldak, Elzbieta
    Prasad, Suhanya
    Swiecicka, Izabela
    [J]. GUT PATHOGENS, 2019, 11 (1)
  • [36] Supersize me: how whole-genome sequencing and big data are transforming epidemiology
    Kao, Rowland R.
    Haydon, Daniel T.
    Lycett, Samantha J.
    Murcia, Pablo R.
    [J]. TRENDS IN MICROBIOLOGY, 2014, 22 (05) : 282 - 291
  • [37] Utility of Whole-Genome Sequencing in Characterizing Acinetobacter Epidemiology and Analyzing Hospital Outbreaks
    Fitzpatrick, Margaret A.
    Ozer, Egon A.
    Hauser, Alan R.
    [J]. JOURNAL OF CLINICAL MICROBIOLOGY, 2016, 54 (03) : 593 - 612
  • [38] Molecular epidemiology of cattle tuberculosis in Mexico through whole-genome sequencing and spoligotyping
    Angelica Perea Razo, Claudia
    Rodriguez Hernandez, Elba
    Ivan Roman Ponce, Sergio
    Milian Suazo, Feliciano
    Robbe-Austerman, Suelee
    Stuber, Tod
    Canto Alarcon, Germinal Jorge
    [J]. PLOS ONE, 2018, 13 (08):
  • [39] Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways
    Babiker, Hamza A.
    Al-Jardani, Amina
    Al-Azri, Saleh
    Petit, Robert A., III
    Saad, Eltaib
    Al-Mahrouqi, Sarah
    Mohamed, Reham A. H.
    Al-Hamidhi, Salama
    Balkhair, Abdullah A.
    Al Kharusi, Najma
    Al Balushi, Laila
    Al Zadjali, Samiya
    Perez-Pardal, Lucia
    Beja-Pereira, Albano
    Babiker, Ahmed
    [J]. MICROBIOLOGY SPECTRUM, 2023, 11 (05):
  • [40] Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways
    Babiker, Hamza A.
    Al-Jardani, Amina
    Al-Azri, Saleh
    Petit III, Robert A.
    Saad, Eltaib
    Al-Mahrouqi, Sarah
    Mohamed, Reham A. H.
    Al-Hamidhi, Salama
    Balkhair, Abdullah A.
    Al Kharusi, Najma
    Al Balushi, Laila
    Al Zadjali, Samiya
    Perez-Pardal, Lucia
    Beja-Pereira, Albano
    Babiker, Ahmed
    Szymczak, Wendy A.
    [J]. MICROBIOLOGY SPECTRUM, 2023,
12345