Single molecule studies of DNA binding proteins using optical tweezers

被引:12
|
作者
Kimura, Yuji
Bianco, Piero R. [1 ]
机构
[1] SUNY Buffalo, Ctr Single Mol Biophys, Buffalo, NY 14214 USA
[2] SUNY Buffalo, Dept Microbiol & Immunol, Buffalo, NY 14214 USA
[3] SUNY Buffalo, Dept Biochem, Buffalo, NY 14214 USA
关键词
D O I
10.1039/b600157m
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
Optical tweezers have become a versatile tool in the biological sciences. Combined with various types of optical microscopy, they are being successfully used to discover the fundamental mechanism of biological processes. Recently, the study of proteins acting on DNA was aggressively undertaken at the single-molecule level. Here, we review the most recent studies which have revealed the dynamic behavior of individual protein molecules at work on DNA, providing detailed mechanistic insight that could not be revealed, at least not easily, using bulk-phase or ensemble approaches.
引用
收藏
页码:868 / 874
页数:7
相关论文
共 50 条
  • [41] Ensemble and single-molecule fluorescence studies of diverse single-stranded DNA binding proteins in Archaea
    McKinney, MC
    Robbins, JB
    Cann, IKO
    Ha, T
    BIOPHYSICAL JOURNAL, 2005, 88 (01) : 65A - 65A
  • [42] A novel magnetic tweezers for manipulation of a single DNA molecule
    Chiou, CH
    Tseng, ZF
    Lee, GB
    MEMS 2004: 17TH IEEE INTERNATIONAL CONFERENCE ON MICRO ELECTRO MECHANICAL SYSTEMS, TECHNICAL DIGEST, 2004, : 613 - 616
  • [43] Characterizing DNA polymerase kappa's binding mechanism to DNA using optical tweezers
    Watts, Joshua
    Williams, Mark C.
    Lone, Samer
    Paramanathan, Thayaparan
    BIOPHYSICAL JOURNAL, 2022, 121 (03) : 477A - 477A
  • [44] UNBINDING FORCE OF A SINGLE MOTOR MOLECULE OF MUSCLE MEASURED USING OPTICAL TWEEZERS
    NISHIZAKA, T
    MIYATA, H
    YOSHIKAWA, H
    ISHIWATA, S
    KINOSITA, K
    NATURE, 1995, 377 (6546) : 251 - 254
  • [45] Dynamic single-molecule force spectroscopy using optical tweezers and nanopores
    Laohakunakorn, Nadanai
    Otto, Oliver
    Sturm, Sebastian
    Kroy, Klaus
    Keyser, Ulrich F.
    OPTICAL TRAPPING AND OPTICAL MICROMANIPULATION X, 2013, 8810
  • [46] Single molecule cross-bridge mechanics using optical tweezers.
    Bartoo, ML
    Veigel, C
    Sparrow, JC
    White, DCS
    Molloy, JE
    BIOPHYSICAL JOURNAL, 1998, 74 (02) : A6 - A6
  • [47] Single-molecule micromanipulation studies of DNA and architectural proteins
    Dame, Remus Th.
    BIOCHEMICAL SOCIETY TRANSACTIONS, 2008, 36 : 732 - 737
  • [48] DNA visualization in single molecule studies carried out with optical tweezers: Covalent versus non-covalent attachment of fluorophores
    Suei, Sandy
    Raudsepp, Allan
    Kent, Lisa M.
    Keen, Stephen A. J.
    Filichev, Vyacheslav V.
    Williams, Martin A. K.
    BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2015, 466 (02) : 226 - 231
  • [49] Direct integration of micromachined pipettes in a flow channel for single DNA molecule study by optical tweezers
    Rusu, C
    van't Oever, R
    de Boer, MJ
    Jansen, HV
    Berenschot, JW
    Bennink, ML
    Kanger, JS
    de Grooth, BG
    Elwenspoek, M
    Greve, J
    Brugger, J
    van den Berg, A
    JOURNAL OF MICROELECTROMECHANICAL SYSTEMS, 2001, 10 (02) : 238 - 246
  • [50] Integrating Optical Tweezers, DNA Tightropes, and Single-Molecule Fluorescence Imaging: Pitfalls and Traps
    Wang, J.
    Barnett, J. T.
    Pollard, M. R.
    Kad, N. M.
    SINGLE-MOLECULE ENZYMOLOGY: NANOMECHANICAL MANIPULATION AND HYBRID METHODS, 2017, 582 : 171 - 192