Re-characterization of hammerhead ribozymes as molecular tools for intermolecular RNA cleavage

被引:4
|
作者
Liu, Getong [1 ]
Huang, Xin [1 ]
Pu, Qinlin [1 ]
Zhao, Yongyun [1 ]
Du, Feng [1 ]
Dong, Juan [1 ]
Cui, Xin [1 ]
Tang, Zhuo [1 ]
机构
[1] Univ Chinese Acad Sci, Nat Prod Res Ctr, Chengdu Inst Biol, Chengdu 610041, Sichuan, Peoples R China
基金
中国科学院西部之光基金;
关键词
IN-VITRO SELECTION; METAL-ION; CLEAVING RIBOZYMES; NUX RULE; CATALYSIS; SEQUENCE; RATES; SITE; PHOSPHOROTHIOATE; TRANSITION;
D O I
10.1039/c7ob00995j
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
A new guideline for the construction of hammerhead ribozymes to achieve trans-cleavage of a single-stranded RNA molecule was developed. The sequence rule of the HHRz cleavage site was highly recommended to be "DWH" with an optimal binding arm length of 8-9nt, which diverged from the former rule of "NUX".
引用
收藏
页码:4681 / 4685
页数:5
相关论文
共 24 条
  • [11] Comparison of three different hammerhead ribozymes for cleavage efficiency of hepatitis C virus RNA in vitro.
    Ohkawa, K
    Yuki, N
    Kanazawa, K
    Ueda, K
    Sasaki, Y
    Kasahara, A
    Hayashi, N
    HEPATOLOGY, 1996, 24 (04) : 1079 - 1079
  • [12] NMR spectroscopic characterization of a model RNA duplex reflecting the core sequence of hammerhead ribozymes
    Hattori, Yoshikazu
    Yamanaka, Daichi
    Morioka, Saori
    Yamaguchi, Taishi
    Tomonari, Honoka
    Kojima, Chojiro
    Tanaka, Yoshiyuki
    NUCLEOSIDES NUCLEOTIDES & NUCLEIC ACIDS, 2018, 37 (07): : 383 - 396
  • [13] Infectious pancreatic necrosis virus RNA cleavage in vitro by hammerhead ribozymes and enhancement of ribozyme catalysis by oligonucleotide facilitators
    Chen J.-Y.
    Chen J.-Y.
    Chu W.-K.
    Wu H.-N.
    Hsu Y.-L.
    Wu J.-L.
    Marine Biotechnology, 2000, 2 (4) : 364 - 375
  • [14] The virtues of self-binding: high sequence specificity for RNA cleavage by self-processed hammerhead ribozymes
    Ohmichi, T
    Kool, ET
    NUCLEIC ACIDS RESEARCH, 2000, 28 (03) : 776 - 783
  • [15] Cleavage of collagen RNA transcripts by hammerhead ribozymes in vitro is mutation-specific and shows competitive binding effects
    Grassi, G
    Forlino, A
    Marini, JC
    NUCLEIC ACIDS RESEARCH, 1997, 25 (17) : 3451 - 3458
  • [16] Infectious pancreatic necrosis virus RNA cleavage in vitro by hammerhead ribozymes and enhancement of ribozyme catalysis hy oligonucleotide facilitators
    Chen, JY
    Chen, JY
    Chu, WK
    Wu, HN
    Hsu, YL
    Wu, JL
    MARINE BIOTECHNOLOGY, 2000, 2 (04) : 364 - 375
  • [17] CLEAVAGE OF ANF MESSENGER-RNA IN-VITRO AND IN-VIVO BY U1-TRANSCRIBED HAMMERHEAD RIBOZYMES
    DEYOUNG, MB
    KINCADEDENKER, J
    BOEHM, CA
    RIEK, RP
    MCSWIGGEN, JA
    GRAHAM, RM
    CLINICAL RESEARCH, 1994, 42 (02): : A124 - A124
  • [18] Engineered ribozymes as molecular tools for site-specific alteration of RNA sequence
    Müller, S
    CHEMBIOCHEM, 2003, 4 (10) : 991 - 997
  • [19] INFLUENCE OF DEGREE OF COMPLEMENTARITY BETWEEN RIBOZYME AND TARGET ON CLEAVAGE OF FBN1 MESSENGER-RNA BY ANTISENSE HAMMERHEAD RIBOZYMES
    PHYLACTOU, LA
    TSIPOURAS, P
    GODFREY, M
    KILPATRICK, MW
    JOURNAL OF CELLULAR BIOCHEMISTRY, 1995, : 216 - 216
  • [20] ''Hairpin'' and ''Hammerhead'' ribozymes directed towards the Mumps virus nucleocapsid RNA: Specific cleavage of a small synthetic RNA substrate and full-length mRNA
    AlbuquerqueSilva, J
    DeVos, MJ
    Bollen, A
    Houard, S
    VIRUS GENES, 1996, 13 (03) : 211 - 219