Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)

被引:2
|
作者
Yang, Yu-Xin [1 ]
Tian, Mi-Hui [1 ]
Liu, Xin-Hong [2 ]
Li, Yue-ling [3 ]
Sun, Zhong-Shuai [3 ]
机构
[1] Taizhou Univ, Coll Life Sci, Taizhou, Peoples R China
[2] Zhejiang Acad Forestry, Hangzhou, Peoples R China
[3] Taizhou Univ, Zhejiang Prov Key Lab Plant Evolutionary Ecol & C, Taizhou 318000, Zhejiang, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Prunus fruticose; Prunus sensu lato; chloroplast genome; phylogenomics; CHERRIES;
D O I
10.1080/23802359.2020.1831993
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Prunus fruticosa is a wild species of Prunus distributed across the central Eurasia. Here, we reported the complete chloroplast (cp) genome of P. fruticosa (GenBank accession number: MT916286). The cp genome was 158,217 bp long, with a large single-copy region (LSC) of 86,322 bp and a small single-copy region (SSC) of 19,153 bp separated by a pair of inverted repeats (IRs) of 26,371 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. fruticosa is closely related with Prunus avium.
引用
收藏
页码:3624 / 3626
页数:3
相关论文
共 50 条
  • [31] Complete chloroplast genome of Ulleung Island endemic flowering cherry, Prunus takesimensis (Rosaceae), in Korea
    Cho, Myong-Suk
    Yang, Ji Young
    Kim, Seung-Chul
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 274 - 275
  • [32] Complete chloroplast genome of the wild Oshima Cherry (Prunus speciosa, Rosaceae) in Izu islands, Japan
    Suna, Zhong-Shuai
    Katsuki, Toshio
    Liu, Xin-Hong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 509 - 510
  • [33] The complete chloroplast genome ofZelkova serrataand its phylogenetic position within Ulmaceae
    Wang, Lingdan
    Zhang, Riqing
    Geng, Maolin
    Qin, Yufeng
    Liu, Hailong
    Li, Mimi
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2182 - 2183
  • [34] Complete chloroplast genome of Prunus matuurai (Rosaceae), a wild flowering cherry endemic to Taiwan Island
    Sun, Zhong-Shuai
    Liu, Xin-Hong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 957 - 958
  • [35] The complete chloroplast genome of Rhododendron molle and its phylogenetic position within Ericaceae
    Liu, Yan
    Li, Qiaoyun
    Wang, Ling
    Wu, Linshi
    Huang, Yaqi
    Zhang, Juan
    Song, Yin
    Liao, Juyang
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (09): : 2587 - 2588
  • [36] Characterization of the complete chloroplast genomes of the endangered shrub species Prunus mongolica and Prunus pedunculata (Rosales: rosaceae)
    Yi-Zhong Duan
    Ye-Hua Shen
    Fu-Ren Kang
    Jian-Wu Wang
    Conservation Genetics Resources, 2019, 11 : 249 - 252
  • [37] Complete mitochondrial genome of the endangered Prunus pedunculata (Prunoideae, Rosaceae) in China: characterization and phylogenetic analysis
    Liu, Qian
    Wu, Zinian
    Tian, Chunyu
    Yang, Yanting
    Liu, Lemeng
    Feng, Yumei
    Li, Zhiyong
    FRONTIERS IN PLANT SCIENCE, 2023, 14
  • [38] Characterization of the complete chloroplast genomes of the endangered shrub species Prunus mongolica and Prunus pedunculata (Rosales: rosaceae)
    Duan, Yi-Zhong
    Shen, Ye-Hua
    Kang, Fu-Ren
    Wang, Jian-Wu
    CONSERVATION GENETICS RESOURCES, 2019, 11 (03) : 249 - 252
  • [39] The complete chloroplast genome of Prunus triloba var. plena and comparative analysis of Prunus species: genome structure, sequence divergence, and phylogenetic analysis
    Wang, Li
    Guo, Zhihong
    Shang, Qianhan
    Sa, Wei
    Wang, Le
    BRAZILIAN JOURNAL OF BOTANY, 2021, 44 (01) : 85 - 95
  • [40] The complete chloroplast genome of Prunus triloba var. plena and comparative analysis of Prunus species: genome structure, sequence divergence, and phylogenetic analysis
    Li Wang
    Zhihong Guo
    Qianhan Shang
    Wei Sa
    Le Wang
    Brazilian Journal of Botany, 2021, 44 : 85 - 95