A protein signature associated with active tuberculosis identified by plasma profiling and network-based analysis

被引:7
|
作者
Mousavian, Zaynab [1 ,2 ,3 ]
Folkesson, Elin [1 ,4 ]
Froberg, Gabrielle [1 ,5 ]
Foroogh, Fariba [1 ,2 ,4 ]
Correia-Neves, Margarida [1 ,6 ,7 ]
Bruchfeld, Judith [1 ,4 ]
Kallenius, Gunilla [1 ,2 ,4 ]
Sundling, Christopher [1 ,2 ,4 ]
机构
[1] Karolinska Inst, Dept Med Solna, Div Infect Dis, Stockholm, Sweden
[2] Karolinska Inst, Ctr Mol Med, Stockholm, Sweden
[3] Univ Tehran, Coll Sci, Sch Math Stat & Comp Sci, Tehran, Iran
[4] Karolinska Univ Hosp, Dept Infect Dis, Stockholm, Sweden
[5] Karolinska Univ Hosp, Karolinska Univ Lab, Dept Clin Microbiol, Stockholm, Sweden
[6] Univ Minho, Sch Med, Life & Hlth Sci Res Inst, Braga, Portugal
[7] PT Govt Associate Lab, ICVS 3Bs, Braga, Portugal
基金
瑞典研究理事会;
关键词
PULMONARY TUBERCULOSIS; LATENT TUBERCULOSIS; DISEASE; EXPRESSION; BIOMARKERS; DIAGNOSIS; INFECTION; LIGAND; DISCRIMINATE; PERFORMANCE;
D O I
10.1016/j.isci.2022.105652
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Annually, approximately 10 million people are diagnosed with active tuberculosis (TB), and 1.4 million die of the disease. If left untreated, each person with active TB will infect 10-15 new individuals. The lack of non-sputum-based diagnostic tests leads to delayed diagnoses of active pulmonary TB cases, contributing to continued disease transmission. In this exploratory study, we aimed to identify biomarkers associated with active TB. We assessed the plasma levels of 92 proteins associated with inflammation in individuals with active TB (n = 20), latent TB (n = 14), or healthy controls (n = 10). Using co-expression network analysis, we identified one module of proteins with strong association with active TB. We removed proteins from the module that had low abundance or were associated with non-TB diseases in published transcriptomic datasets, resulting in a 12-protein plasma signature that was highly enriched in individuals with pulmonary and extrapulmonary TB and was further associated with disease severity.
引用
收藏
页数:20
相关论文
共 50 条
  • [31] Microarray profiling identified a molecular signature associated with ritodrine-induced liver toxicity
    Tsuchiya, Hiroyoshi
    Tsuda, Hidetoshi
    Fujimura, Akio
    Koshimizu, Taka-aki
    JOURNAL OF PHARMACOLOGICAL SCIENCES, 2009, 109 : 147P - 147P
  • [32] Time-aware Egocentric network-based User Profiling
    Canut, Marie-Francoise
    On-At, Sirinya
    Peninou, Andre
    Sedes, Florence
    PROCEEDINGS OF THE 2015 IEEE/ACM INTERNATIONAL CONFERENCE ON ADVANCES IN SOCIAL NETWORKS ANALYSIS AND MINING (ASONAM 2015), 2015, : 569 - 572
  • [33] Improved network-based identification of protein orthologs
    Yosef, Nir
    Sharan, Roded
    Noble, William Stafford
    BIOINFORMATICS, 2008, 24 (16) : I200 - I206
  • [34] Protein Structure Network-based Drug Design
    Liang, Zhongjie
    Hu, Guang
    MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2016, 16 (16) : 1330 - 1343
  • [35] COPD subtypes identified by network-based clustering of blood gene expression
    Chang, Yale
    Glass, Kimberly
    Liu, Yang-Yu
    Silverman, Edwin K.
    Crapo, James D.
    Tal-Singer, Ruth
    Bowler, Russ
    Dy, Jennifer
    Cho, Michael
    Castaldi, Peter
    GENOMICS, 2016, 107 (2-3) : 51 - 58
  • [36] Neural Network-Based Active Learning in Multivariate Calibration
    Ukil, Abhisek
    Bernasconi, Jakob
    IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS PART C-APPLICATIONS AND REVIEWS, 2012, 42 (06): : 1763 - 1771
  • [37] Research on active network-based online auction system
    Zhao, ZX
    Yu, CH
    Wavelet Analysis and Active Media Technology Vols 1-3, 2005, : 911 - 916
  • [38] Neural Network-Based Active Control for Offshore Platforms
    周亚军
    赵德有
    ChinaOceanEngineering, 2003, (03) : 460 - 467
  • [39] Neural network-based active control for offshore platforms
    Zhou, YJ
    Zhao, DY
    CHINA OCEAN ENGINEERING, 2003, 17 (03) : 461 - 468
  • [40] Wavelet network-based classification of transients using dominant frequency signature
    Chatterjee, S.
    Chakravorti, S.
    Roy, C. K.
    Dey, D.
    ELECTRIC POWER SYSTEMS RESEARCH, 2008, 78 (01) : 21 - 29