PRECOG: PREdicting COupling probabilities of G-protein coupled receptors

被引:16
|
作者
Singh, Gurdeep [1 ,2 ]
Inoue, Asuka [3 ]
Gutkind, J. Silvio [4 ,5 ]
Russell, Robert B. [1 ,2 ]
Raimondi, Francesco [1 ,2 ]
机构
[1] Heidelberg Univ, Bioquant, CellNetworks, Neuenheimer Feld 267, D-69120 Heidelberg, Germany
[2] Heidelberg Univ, BZH, Neuenheimer Feld 328, D-69120 Heidelberg, Germany
[3] Tohoku Univ, Grad Sch Pharmaceut Sci, Sendai, Miyagi 9808578, Japan
[4] Univ Calif San Diego, Dept Pharmacol, La Jolla, CA 92093 USA
[5] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA 92093 USA
关键词
STRUCTURAL COMMUNICATION; STRUCTURE NETWORK; GPCRS; SPECIFICITY; SUBTYPES; MACHINE; MODELS;
D O I
10.1093/nar/gkz392
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
G-protein coupled receptors (GPCRs) control multiple physiological states by transducing a multitude of extracellular stimuli into the cell via coupling to intra-cellular heterotrimeric G-proteins. Deciphering which G-proteins couple to each of the hundreds of GPCRs present in a typical eukaryotic organism is therefore critical to understand signalling. Here, we present PRECOG (precog.russelllab.org): a web server for predicting GPCR coupling, which allows users to: (i) predict coupling probabilities for GPCRs to individual G-proteins instead of subfamilies; (ii) visually inspect the protein sequence and structural features that are responsible for a particular coupling; (iii) suggest mutations to rationally design artificial GPCRs with new coupling properties based on predetermined coupling features.
引用
收藏
页码:W395 / W401
页数:7
相关论文
共 50 条
  • [21] Agonist binding to G-protein coupled receptors
    Strange, PG
    BRITISH JOURNAL OF PHARMACOLOGY, 2000, 129 (04) : 820 - 821
  • [22] G-protein coupled chemoattractant receptors and cancer
    Huang, Jian
    Chen, Keqiang
    Gong, Wanghua
    Dunlop, Nancy M.
    Wang, Ji Ming
    FRONTIERS IN BIOSCIENCE-LANDMARK, 2008, 13 : 3352 - 3363
  • [23] Recent Achievements on G-Protein Coupled Receptors
    Filipek, Slawomir
    CURRENT MEDICINAL CHEMISTRY, 2012, 19 (08) : 1089 - 1089
  • [24] RAMPs and the modulation of G-protein coupled receptors
    Poyner, D. R.
    PROCEEDINGS OF THE XXVIII EUROPEAN SECTION MEETING OF THE INTERNATIONAL SOCIETY FOR HEART RESEARCH, 2008, : 9 - 11
  • [25] STRUCTURE AND FUNCTION OF G-PROTEIN COUPLED RECEPTORS
    DIXON, RAF
    STRADER, CD
    SIGAL, IS
    ANNUAL REPORTS IN MEDICINAL CHEMISTRY, 1988, 23 : 221 - 233
  • [26] Proteopedia entry: G-protein coupled receptors
    Johnson, R. Jeremy
    Applegarth, Jacob
    Bennett, Steven
    Caskey, Sydney
    Coatney, Connor
    Corsbie, Kurt
    Cotter, Allison
    Cotter, Daniel
    Coulis, Alexis
    Hansen, Heather
    Hart, Whitney
    Koehler, Cutter
    Koelper, Andrew
    Kuhlman, Stephanie
    Mitchell, Chandler
    Moskal, Blake
    Murfield, Olivia
    Paton, Allie
    Schemenauer, Daniel
    Stankavich, Brittany
    Taylor, Clayton
    Waibel, Brent
    Williams, L. Dean
    BIOCHEMISTRY AND MOLECULAR BIOLOGY EDUCATION, 2017, 45 (03) : 277 - 278
  • [27] G-protein coupled receptors regulating cough
    Maher, Sarah A.
    Dubuis, Eric D.
    Belvisi, Maria G.
    CURRENT OPINION IN PHARMACOLOGY, 2011, 11 (03) : 248 - 253
  • [28] STRUCTURE AND FUNCTION OF G-PROTEIN COUPLED RECEPTORS
    JACKSON, T
    PHARMACOLOGY & THERAPEUTICS, 1991, 50 (03) : 425 - 442
  • [29] G-protein coupled receptors in plant cells
    Millner, PA
    Causier, BE
    JOURNAL OF EXPERIMENTAL BOTANY, 1996, 47 (301) : 983 - 992
  • [30] MUTATIONS AND DISEASES OF G-PROTEIN COUPLED RECEPTORS
    BIRNBAUMER, M
    JOURNAL OF RECEPTOR AND SIGNAL TRANSDUCTION RESEARCH, 1995, 15 (1-4): : 131 - 160