PRECOG: PREdicting COupling probabilities of G-protein coupled receptors

被引:16
|
作者
Singh, Gurdeep [1 ,2 ]
Inoue, Asuka [3 ]
Gutkind, J. Silvio [4 ,5 ]
Russell, Robert B. [1 ,2 ]
Raimondi, Francesco [1 ,2 ]
机构
[1] Heidelberg Univ, Bioquant, CellNetworks, Neuenheimer Feld 267, D-69120 Heidelberg, Germany
[2] Heidelberg Univ, BZH, Neuenheimer Feld 328, D-69120 Heidelberg, Germany
[3] Tohoku Univ, Grad Sch Pharmaceut Sci, Sendai, Miyagi 9808578, Japan
[4] Univ Calif San Diego, Dept Pharmacol, La Jolla, CA 92093 USA
[5] Univ Calif San Diego, Moores Canc Ctr, La Jolla, CA 92093 USA
关键词
STRUCTURAL COMMUNICATION; STRUCTURE NETWORK; GPCRS; SPECIFICITY; SUBTYPES; MACHINE; MODELS;
D O I
10.1093/nar/gkz392
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
G-protein coupled receptors (GPCRs) control multiple physiological states by transducing a multitude of extracellular stimuli into the cell via coupling to intra-cellular heterotrimeric G-proteins. Deciphering which G-proteins couple to each of the hundreds of GPCRs present in a typical eukaryotic organism is therefore critical to understand signalling. Here, we present PRECOG (precog.russelllab.org): a web server for predicting GPCR coupling, which allows users to: (i) predict coupling probabilities for GPCRs to individual G-proteins instead of subfamilies; (ii) visually inspect the protein sequence and structural features that are responsible for a particular coupling; (iii) suggest mutations to rationally design artificial GPCRs with new coupling properties based on predetermined coupling features.
引用
收藏
页码:W395 / W401
页数:7
相关论文
共 50 条
  • [2] Predicting G-protein coupled receptors-G-protein coupling specificity based on autocross-covariance transform
    Guo, Yanzhi
    Li, Menglong
    Lu, Minchun
    Wen, Zhining
    Huang, Zhongtian
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2006, 65 (01) : 55 - 60
  • [3] G-protein coupled receptors
    Bockaert, Joel
    M S-MEDECINE SCIENCES, 2012, 28 (12): : 1133 - 1137
  • [4] DISEASED G-PROTEIN COUPLED RECEPTORS
    LEFKOWITZ, RJ
    PREMONT, RT
    JOURNAL OF CLINICAL INVESTIGATION, 1993, 92 (05): : 2089 - 2089
  • [5] Dimerization of G-Protein Coupled Receptors
    Lakshmi A Devi
    Linda S Brady
    Neuropsychopharmacology, 2000, 23 : S3 - S4
  • [6] MODELS OF G-PROTEIN COUPLED RECEPTORS
    GUY, HR
    KERLAVAGE, AR
    BIOPHYSICAL JOURNAL, 1990, 57 (02) : A282 - A282
  • [7] REGULATION OF G-PROTEIN COUPLED RECEPTORS
    BENOVIC, JL
    CARON, MG
    LEFKOWITZ, RJ
    BIOPHYSICAL JOURNAL, 1990, 57 (02) : A216 - A216
  • [8] Introduction: G-Protein Coupled Receptors
    Sakmar, Thomas P.
    CHEMICAL REVIEWS, 2017, 117 (01) : 1 - 3
  • [9] Modulation of G-Protein Coupled Receptors
    Lowery, Robert G.
    Siderovski, David P.
    GENETIC ENGINEERING & BIOTECHNOLOGY NEWS, 2011, 31 (13): : 30 - 30
  • [10] G-protein coupled receptors and their associated proteins
    不详
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2005, 34 (06): : 543 - 543