Structural organization of sterol molecules in DPPC bilayers: a coarse-grained molecular dynamics investigation

被引:8
|
作者
Zhang, Yawen [1 ]
Carter, James W. [1 ]
Lervik, Anders [1 ,2 ]
Brooks, Nicholas J. [1 ]
Seddon, John M. [1 ]
Bresme, Fernando [1 ]
机构
[1] Univ London Imperial Coll Sci Technol & Med, Dept Chem, London SW7 2AZ, England
[2] Norwegian Univ Sci & Technol, Dept Chem, N-7034 Trondheim, Norway
基金
英国工程与自然科学研究理事会;
关键词
COMPUTER-SIMULATIONS; REGULAR DISTRIBUTION; VORONOI POLYHEDRA; LIPID RAFTS; CHOLESTEROL; MEMBRANES; MODEL; GLYCEROPHOSPHOLIPIDS; PHOSPHOLIPIDS; FLUCTUATIONS;
D O I
10.1039/c5sm03051j
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We investigate the structural organization of cholesterol (CHOL) analogues in 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) bilayers using coarse-grained molecular dynamics simulations and the MARTINI forcefield. Different sterol molecules are modelled by increasing (CHOLL) or decreasing (CHOLS) the diameter of the sterol beads employed in the MARTINI model of CHOL. At high sterol concentrations, (x(sterol) = 0.5), typical of liquid ordered phases, we find that the sterol arrangement and sterol-DPPC interactions strongly depend on the sterol size. Smaller sterols (CHOLS and CHOL) form linear clusters, while the larger sterols (CHOLL) arrange themselves into disc shaped clusters. By combining structural and dynamical properties we also investigate the S-o -> L-d transition for the CHOLL and CHOLS sterols. We show that small changes in the sterol size significantly affect the stability of the gel phase with the gel phase stabilized by the small sterols, but destabilized by large sterols. The general dependence of the phase behaviour of the membrane with sterol content is reminiscent of the one observed in naturally occurring membranes. The relevance of our results to understand current cholesterol-bilayer structural models is discussed.
引用
收藏
页码:2108 / 2117
页数:10
相关论文
共 50 条
  • [31] Investigation of the mechanical responses of copper nanowires based on molecular dynamics and coarse-grained molecular dynamics
    Yu-Chen Su
    Shan Jiang
    Yong Gan
    Zhen Chen
    Jian-Ming Lu
    Computational Particle Mechanics, 2019, 6 : 177 - 190
  • [32] Investigation of molecular diffusivity of photoresist membrane using coarse-grained molecular dynamics simulation
    Yagyu, Hiromasa
    Hirai, Yoshikazu
    Makino, Yoshihide
    Sugano, Koji
    Toshiyuki, Tsuchiya
    Tabata, Osamu
    26TH EUROPEAN CONFERENCE ON SOLID-STATE TRANSDUCERS, EUROSENSOR 2012, 2012, 47 : 402 - 405
  • [33] Phase behavior of supported lipid bilayers: A systematic study by coarse-grained molecular dynamics simulations
    Poursoroush, Asma
    Sperotto, Maria Maddalena
    Laradji, Mohamed
    JOURNAL OF CHEMICAL PHYSICS, 2017, 146 (15):
  • [34] Investigation of the Mechanism of Antimicrobial Lipopeptides using Coarse-Grained Molecular Dynamics Simulations
    Lin, Dejun
    Grossfield, Alan
    BIOPHYSICAL JOURNAL, 2014, 106 (02) : 89A - 89A
  • [35] Investigation of Protein Folding by Coarse-Grained Molecular Dynamics with the UNRES Force Field
    Maisuradze, Gia G.
    Senet, Patrick
    Czaplewski, Cezary
    Liwo, Adam
    Scheraga, Harold A.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2010, 114 (13): : 4471 - 4485
  • [36] Investigation of the Mechanism of Antimicrobial Lipopeptides using Coarse-Grained Molecular Dynamics Simulations
    Lin, Dejun
    Horn, Josh N.
    Xia, Zhen
    Ren, Pengyu
    Grossfield, Alan
    BIOPHYSICAL JOURNAL, 2013, 104 (02) : 602A - 602A
  • [37] Coarse-grained molecular dynamics simulations of immobilized micelle systems and their interactions with hydrophobic molecules
    Gokhale, Devashish
    Chen, Ian
    Doyle, Patrick S.
    SOFT MATTER, 2022, 18 (24) : 4625 - 4637
  • [38] Coarse-grained molecular dynamics simulation of polymers: Structures and dynamics
    Shi, Rui
    Qian, Hu-Jun
    Lu, Zhong-Yuan
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2023, 13 (06)
  • [39] Interactions of lipid bilayers with supports: A coarse-grained molecular simulation study
    Xing, Chenyue
    Faller, Roland
    JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (23): : 7086 - 7094
  • [40] Structural and dynamic properties of different DPPC lipid membranes using a coarse-grained model
    Li, Bei
    Cheng, Yuan
    Yeo, Jingjie
    Sridhar, Narayanaswamy
    Zhang, Yongwei
    JOURNAL OF CONTROLLED RELEASE, 2017, 259 : E10 - E10