Neural data science: accelerating the experiment-analysis-theory cycle in large-scale neuroscience

被引:50
|
作者
Paninski, L. [1 ,2 ]
Cunningham, J. P. [1 ]
机构
[1] Columbia Univ, Ctr Theoret Neurosci, Zuckerman Mind Brain Behav Inst, Grossman Ctr Stat Mind,Dept Stat, New York, NY 10027 USA
[2] Columbia Univ, Ctr Theoret Neurosci, Zuckerman Mind Brain Behav Inst, Grossman Ctr Stat Mind,Dept Neurosci, New York, NY USA
关键词
SINGLE-TRIAL DYNAMICS; STATISTICAL-MODELS; CORTICAL ACTIVITY; GAUSSIAN-PROCESS; MOTOR; BRAIN; INFERENCE; RECORDINGS; NEURONS; DECONVOLUTION;
D O I
10.1016/j.conb.2018.04.007
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Modern large-scale multineuronal recording methodologies, including multielectrode arrays, calcium imaging, and optogenetic techniques, produce single-neuron resolution data of a magnitude and precision that were the realm of science fiction twenty years ago. The major bottlenecks in systems and circuit neuroscience no longer lie in simply collecting data from large neural populations, but also in understanding this data: developing novel scientific questions, with corresponding analysis techniques and experimental designs to fully harness these new capabilities and meaningfully interrogate these questions. Advances in methods for signal processing, network analysis, dimensionality reduction, and optimal control developed in lockstep with advances in experimental neurotechnology - promise major breakthroughs in multiple fundamental neuroscience problems. These trends are clear in a broad array of subfields of modern neuroscience; this review focuses on recent advances in methods for analyzing neural time-series data with single-neuronal precision.
引用
收藏
页码:232 / 241
页数:10
相关论文
共 50 条
  • [21] Large-Scale Visual Data Analysis
    Johnson, Chris
    2012 IEEE 26TH INTERNATIONAL PARALLEL AND DISTRIBUTED PROCESSING SYMPOSIUM (IPDPS), 2012, : 1 - 1
  • [22] Large-Scale Web Data Analysis
    Leskovec, Jure
    IEEE INTELLIGENT SYSTEMS, 2011, 26 (01) : 11 - 11
  • [23] A Simple but Powerful Heuristic Method for Accelerating k-Means Clustering of Large-Scale Data in Life Science
    Ichikawa, Kazuki
    Morishita, Shinichi
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2014, 11 (04) : 681 - 692
  • [24] Computational and data Grids in large-scale science and engineering
    Johnston, WE
    FUTURE GENERATION COMPUTER SYSTEMS, 2002, 18 (08) : 1085 - 1100
  • [25] Accelerating Spatiotemporal Supervised Training of Large-Scale Spiking Neural Networks on GPU
    Liang, Ling
    Chen, Zhaodong
    Deng, Lei
    Tu, Fengbin
    Li, Guoqi
    Xie, Yuan
    PROCEEDINGS OF THE 2022 DESIGN, AUTOMATION & TEST IN EUROPE CONFERENCE & EXHIBITION (DATE 2022), 2022, : 658 - 663
  • [26] SciSciNet: A large-scale open data lake for the science of science research
    Lin, Zihang
    Yin, Yian
    Liu, Lu
    Wang, Dashun
    SCIENTIFIC DATA, 2023, 10 (01)
  • [27] SciSciNet: A large-scale open data lake for the science of science research
    Zihang Lin
    Yian Yin
    Lu Liu
    Dashun Wang
    Scientific Data, 10
  • [28] LARGE-SCALE PROBLEM ANALYSIS AND DECOMPOSITION THEORY
    GUARDABASSI, G
    JOURNAL OF THE FRANKLIN INSTITUTE-ENGINEERING AND APPLIED MATHEMATICS, 1978, 306 (01): : 41 - 62
  • [29] Accelerating Large-Scale Data Analysis by Offloading to High-Performance Computing Libraries using Alchemist
    Gittens, Alex
    Rothauge, Kai
    Wang, Shusen
    Mahoney, Michael W.
    Gerhardt, Lisa
    Prabhat
    Kottalam, Jey
    Ringenburg, Michael
    Maschhoff, Kristyn
    KDD'18: PROCEEDINGS OF THE 24TH ACM SIGKDD INTERNATIONAL CONFERENCE ON KNOWLEDGE DISCOVERY & DATA MINING, 2018, : 293 - 301
  • [30] Neural network acceleration of large-scale structure theory calculations
    DeRose, Joseph
    Chen, Shi-Fan
    White, Martin
    Kokron, Nickolas
    JOURNAL OF COSMOLOGY AND ASTROPARTICLE PHYSICS, 2022, (04):