Thermodynamics of tubelike flexible polymers

被引:12
|
作者
Vogel, Thomas [1 ,2 ]
Neuhaus, Thomas [3 ]
Bachmann, Michael [1 ,2 ,4 ]
Janke, Wolfhard [1 ,2 ]
机构
[1] Univ Leipzig, Inst Theoret Phys, D-04009 Leipzig, Germany
[2] Univ Leipzig, Ctr Theoret Sci, D-04009 Leipzig, Germany
[3] Forschungszentrum Julich, Julich Supercomp Ctr, D-52425 Julich, Germany
[4] Forschungszentrum Julich, Inst Festkorperforsch, Theorie 2, D-52425 Julich, Germany
来源
PHYSICAL REVIEW E | 2009年 / 80卷 / 01期
关键词
PROTEIN; COMPACTNESS; THICKNESS; MODEL;
D O I
10.1103/PhysRevE.80.011802
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
In this work, we discuss the general phase behavior of short tubelike flexible polymers. The geometric thickness constraint is implemented through the concept of the global radius of curvature. We use sophisticated Monte Carlo sampling methods to simulate small bead-stick polymer models with Lennard-Jones interaction among nonbonded monomers. We analyze energetic fluctuations and structural quantities to classify conformational pseudophases. We find that the tube thickness influences the thermodynamic behavior of simple tubelike polymers significantly, i.e., for a given temperature, the formation of secondary structures strongly depends on the tube thickness.
引用
收藏
页数:8
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