Comparative analysis of Phytophthora genomes reveals oomycete pathogenesis in crops

被引：5

作者：

Gao, Rui-Fang ^{[1
,2
]}

Wang, Jie-Yu ^{[3
,4
]}

Liu, Ke-Wei ^{[5
,6
,7
]}

Yoshida, Kouki ^{[8
]}

Hsiao, Yu-Yun ^{[9
]}

Shi, Yi-Xiang ^{[10
]}

Tsai, Kun-Chan ^{[11
]}

Chen, You-Yi ^{[12
]}

Mitsuda, Nobutaka ^{[13
]}

Liang, Chieh-Kai ^{[12
]}

Wang, Zhi-Wen ^{[14
]}

Wang, Ying ^{[1
,2
]}

Zhang, Di-Yang ^{[3
]}

Huang, Laiqiang ^{[5
,6
]}

Zhao, Xiang ^{[14
]}

Zhong, Wen-Ying ^{[14
]}

Cheng, Ying-Hui ^{[15
]}

Jiang, Zi-De ^{[16
]}

Li, Ming-He ^{[3
]}

Sun, Wei-Hong ^{[3
]}

Yu, Xia ^{[3
]}

Hu, Wenqi ^{[3
]}

Zhou, Zhuang ^{[3
,17
]}

Zhou, Xiao-Fan ^{[16
]}

Yeh, Chuan-Ming ^{[13
,18
,19
]}

Katoh, Kazutaka ^{[20
]}

Tsai, Wen-Chieh ^{[9
,12
,21
]}

Liu, Zhong-Jian ^{[3
,6
,17
,22
]}

Martin, Francis ^{[23
]}

Zhang, Gui-Ming ^{[1
,2
]}

机构：

[1] Anim & Plant Inspect & Quarantine Technol Ctr She, Shenzhen 518045, Peoples R China

[2] Shenzhen Acad Inspect & Quarantine, Shenzhen Key Lab Res & Dev Detect Technol Alien P, Shenzhen 518045, Peoples R China

[3] Fujian Agr & Forestry Univ, Natl Forestry & Grassland Adm Orchid Conservat &, Key Lab, Coll Landscape Architecture, Fuzhou 350002, Peoples R China

[4] Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable U, South China Bot Garden, Guangzhou 510650, Peoples R China

[5] Tsinghua Univ, Sch Life Sci, Beijing 100084, Peoples R China

[6] Tsinghua Univ, Ctr Biotechnol & Biomed, Tsinghua Shenzhen Int Grad Sch, Shenzhen Key Lab Gene & Antibody Therapy,State Ke, Shenzhen 518055, Peoples R China

[7] Tsinghua Berkeley Shenzhen Inst TBSI, Ctr Precis Med & Healthcare, Shenzhen 518055, Peoples R China

[8] Taisei Corp, Technol Ctr, Totsuka Ku, Nase Cho 344-1, Yokohama, Kanagawa 2450051, Japan

[9] Natl Cheng Kung Univ, Orchid Res & Dev Ctr, Tainan 701, Taiwan

[10] Shanghai Major Biopharm Technol Co Ltd, Shanghai 201203, Peoples R China

[11] Reber Genet Co Ltd, Taipei 10685, Taiwan

[12] Natl Cheng Kung Univ, Dept Life Sci, Tainan 701, Taiwan

[13] Natl Inst Adv Ind Sci & Technol, Bioprod Res Inst, Cent 6,Higashi 1-1-1, Tsukuba, Ibaraki 3058562, Japan

[14] PubBio Tech Serv Corp, Wuhan 430070, Peoples R China

[15] Shenzhen & Chinese Acad Sci, Fairylake Bot Garden, Shenzhen 518004, Peoples R China

[16] South China Agr Univ, Coll Agr, Guangzhou 510640, Peoples R China

[17] Zhejiang Acad Agr Sci, Zhejiang Inst Subtrop Crops, Wenzhou 325005, Peoples R China

[18] Saitama Univ, Grad Sch Sci & Engn, Sakura Ku, 255 Shimo Okubo, Saitama 3388570, Japan

[19] Natl Chung Hsing Univ, Inst Mol Biol, Taichung 40227, Taiwan

[20] Osaka Univ, Res Inst Microbial Dis, 3-1 Yamadaoka, Suita, Osaka 5650871, Japan

[21] Natl Cheng Kung Univ, Inst Trop Plant Sci & Microbiol, Tainan 701, Taiwan

[22] Shandong Acad Agr Sci, Inst Vegetable & Flowers, Jinan 250100, Peoples R China

[23] Univ Lorraine, Ctr INRA Grand Est Nancy, Inst Natl Rech Agron, UMR Interact Arbres Microorganismes, F-54280 Champenoux, France

来源：

HELIYON | 2021年 / 7卷 / 02期

基金：

国家重点研发计划;

关键词：

Phytophthora; Genome; Phylogenetic; Pathogenicity; Horizontally gene transfer; MULTIPLE SEQUENCE ALIGNMENT; WEB SERVER; GENE; EVOLUTION; VIRULENCE; PHYLOGENY; PERFORMANCE; RESISTANCE; EXPRESSION; PREDICTION;

D O I：

10.1016/j.heliyon.2021.e06317

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

The oomycete genus Phytophthora includes devastating plant pathogens that are found in almost all ecosystems. We sequenced the genomes of two quarantined Phytophthora species-P. fragariae and P. rubi. Comparing these Phytophthora species and related genera allowed reconstruction of the phylogenetic relationships within the genus Phytophthora and revealed Phytophthora genomic features associated with infection and pathogenicity. We found that several hundred Phytophthora genes are putatively inherited from red algae, but Phytophthora does not have vestigial plastids originating from phototrophs. The horizontally-transferred Phytophthora genes are abundant transposons that "transmit" exogenous gene to Phytophthora species thus bring about the gene recombination possibility. Several expansion events of Phytophthora gene families associated with cell wall biogenesis can be used as mutational targets to elucidate gene function in pathogenic interactions with host plants. This work enhanced the understanding of Phytophthora evolution and will also be helpful for the design of phytopathological control strategies.

引用

页数：12

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