Human protein interaction networks across tissues and diseases

被引:54
|
作者
Yeger-Lotem, Esti [1 ]
Sharan, Roded [2 ]
机构
[1] Ben Gurion Univ Negev, Dept Biochem & Clin Pharmacol, IL-84105 Beer Sheva, Israel
[2] Tel Aviv Univ, Blavatnik Sch Comp Sci, IL-69978 Tel Aviv, Israel
来源
FRONTIERS IN GENETICS | 2015年 / 6卷
关键词
MOLECULAR INTERACTION DATABASE; HUMAN GENE-EXPRESSION; MASS-SPECTROMETRY; HUMAN-CELLS; SCALE MAP; SPECIFICITY; ATLAS; DISORDERS; UPDATE; DRAFT;
D O I
10.3389/fgene.2015.00257
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Protein interaction networks are an important framework for studying protein function, cellular processes, and genotype-to-phenotype relationships. While our view of the human interaction network is constantly expanding, less is known about networks that form in biologically important contexts such as within distinct tissues or in disease conditions. Here we review efforts to characterize these networks and to harness them to gain insights into the molecular mechanisms underlying human disease.
引用
收藏
页数:5
相关论文
共 50 条
  • [21] Identification of target genes in cancer diseases using protein–protein interaction networks
    Arumugam Amala
    Isaac Arnold Emerson
    [J]. Network Modeling Analysis in Health Informatics and Bioinformatics, 2019, 8
  • [22] Human protein atlas: A resource for target expression across 19 tissues
    Schaer, Sandra
    Tognetti, Marco
    Bruderer, Roland
    Shichkova, Polina
    Feng, Yuehan
    Reiter, Lukas
    [J]. CANCER RESEARCH, 2024, 84 (06)
  • [23] Most protein domains exist as variants with distinct functions across cells, tissues and diseases
    Vitting-Seerup, Kristoffer
    [J]. NAR GENOMICS AND BIOINFORMATICS, 2023, 5 (03)
  • [24] Key interaction networks: Identifying evolutionarily conserved non-covalent interaction networks across protein families
    Yehorova, Dariia
    Crean, Rory M.
    Kasson, Peter M.
    Kamerlin, Shina C. L.
    [J]. PROTEIN SCIENCE, 2024, 33 (03)
  • [25] Sharing and Specificity of Co-expression Networks across 35 Human Tissues
    Pierson, Emma
    Koller, Daphne
    Battle, Alexis
    Mostafavi, Sara
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (05)
  • [26] Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues
    Lopes-Ramos, Camila M.
    Chen, Cho-Yi
    Kuijjer, Marieke L.
    Paulson, Joseph N.
    Sonawane, Abhijeet R.
    Fagny, Maud
    Platig, John
    Glass, Kimberly
    Quackenbush, John
    DeMeo, Dawn L.
    [J]. CELL REPORTS, 2020, 31 (12):
  • [27] Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases
    Singhania, Akul
    Graham, Christine M.
    Gabrysova, Leona
    Moreira-Teixeira, Lucia
    Stavropoulos, Evangelos
    Pitt, Jonathan M.
    Chakravarty, Probir
    Warnatsch, Annika
    Branchett, William J.
    Conejero, Laura
    Lin, Jing-Wen
    Davidson, Sophia
    Wilson, Mark S.
    Bancroft, Gregory
    Langhorne, Jean
    Frickel, Eva
    Sesay, Abdul K.
    Priestnall, Simon L.
    Herbert, Eleanor
    Ioannou, Marianna
    Wang, Qian
    Humphreys, Ian R.
    Dodd, Jonathan
    Openshaw, Peter J. M.
    Mayer-Barber, Katrin D.
    Jankovic, Dragana
    Sher, Alan
    Lloyd, Clare M.
    Baldwin, Nicole
    Chaussabel, Damien
    Papayannopoulos, Venizelos
    Wack, Andreas
    Banchereau, Jacques F.
    Pascual, Virginia M.
    O'Garra, Anne
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [28] Transcriptional profiling unveils type I and II interferon networks in blood and tissues across diseases
    Akul Singhania
    Christine M. Graham
    Leona Gabryšová
    Lúcia Moreira-Teixeira
    Evangelos Stavropoulos
    Jonathan M. Pitt
    Probir Chakravarty
    Annika Warnatsch
    William J. Branchett
    Laura Conejero
    Jing-Wen Lin
    Sophia Davidson
    Mark S. Wilson
    Gregory Bancroft
    Jean Langhorne
    Eva Frickel
    Abdul K. Sesay
    Simon L. Priestnall
    Eleanor Herbert
    Marianna Ioannou
    Qian Wang
    Ian R. Humphreys
    Jonathan Dodd
    Peter J. M. Openshaw
    Katrin D. Mayer-Barber
    Dragana Jankovic
    Alan Sher
    Clare M. Lloyd
    Nicole Baldwin
    Damien Chaussabel
    Venizelos Papayannopoulos
    Andreas Wack
    Jacques F. Banchereau
    Virginia M. Pascual
    Anne O’Garra
    [J]. Nature Communications, 10
  • [29] Identification of target genes in cancer diseases using protein-protein interaction networks
    Amala, Arumugam
    Emerson, Isaac Arnold
    [J]. NETWORK MODELING AND ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS, 2019, 8 (01):
  • [30] DeCoaD: Determining correlations among diseases using protein interaction networks
    Hamaneh M.B.
    Yu Y.-K.
    [J]. BMC Research Notes, 8 (1)