Optimization of Capping Potentials for Spectroscopic Parameters in Hybrid Quantum Mechanical/Mechanical Modeling Calculations

被引:19
|
作者
Komin, Sittipong [1 ]
Sebastiani, Daniel [1 ]
机构
[1] Max Planck Inst Polymer Res, D-55128 Mainz, Germany
关键词
NMR CHEMICAL-SHIFTS; SOLID-STATE NMR; PARRINELLO MOLECULAR-DYNAMICS; AB-INITIO; HARTREE-FOCK; QM/MM; WATER; SIMULATION; COMPLEXES;
D O I
10.1021/ct800525u
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We present a capping scheme for hybrid calculations which is designed for a systematic optimization to reproduce the molecular structure, frontier bond potential, and spectroscopic properties for the quantum subsystem. Our technique is capable of reducing the perturbations of the electronic structure which are normally caused by conventional link atoms between quantum and classical regions. Specifically, we propose analytic effective core potentials with a small set of adjustable parameters, which are optimized to reproduce the full-quantum-mechanical (full-QM) properties in the direct environment of the bond cleavage. The capping potentials are conceptually simple and easy to employ in most instances without significant code modifications. They do not require any further external geometry constraints and yield also reasonable results for the potential energy surface. We benchmark these potentials for a series of chemically and biologically relevant molecules calculating NMR chemical shifts, protonation energies, and optimized geometries. Our optimized QM/mechanical modeling (MM) potentials are another step toward a realistic first-principles prediction of spectroscopic parameters in complex chemical environments using hybrid QM/MM calculations.
引用
收藏
页码:1490 / 1498
页数:9
相关论文
共 50 条
  • [21] Quantum mechanical calculations on metal-bearing dicarbides and experimental spectroscopic verification
    Halfen, DeWayne
    Burton, Mark
    Deyonker, Nathan
    Clouthier, Dennis
    Ziurys, Lucy
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [22] Effective fragment method for modeling solvent effects in quantum mechanical calculations
    Day, Paul N.
    Jensen, Jan H.
    Gordon, Mark S.
    Webb, Simon P.
    Stevens, Walter J.
    Krauss, Morris
    Garmer, David
    Basch, Harold
    Cohen, Drora
    Journal of Chemical Physics, 1996, 105 (05):
  • [23] An effective fragment method for modeling solvent effects in quantum mechanical calculations
    Day, PN
    Jensen, JH
    Gordon, MS
    Webb, SP
    Stevens, WJ
    Krauss, M
    Garmer, D
    Basch, H
    Cohen, D
    JOURNAL OF CHEMICAL PHYSICS, 1996, 105 (05): : 1968 - 1986
  • [24] Improved Constrained Optimization Method for Reaction-Path Determination in Quantum Mechanical/Molecular Mechanical Calculations
    Jung, Jaewoon
    Re, Suyong
    Sugita, Yuji
    Ten-no, Seiichiro
    BIOPHYSICAL JOURNAL, 2013, 104 (02) : 511A - 511A
  • [25] Development of a hybrid method combining quantum mechanical calculations and discrete molecular dynamics for metallo-protein modeling
    Sparta, Manuel
    Alexandrova, Anastassia N.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243
  • [26] Construction of solvable quantum mechanical potentials
    Ahmed, SAS
    Borah, BC
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 2003, 36 (39): : 10071 - 10082
  • [27] IMAGING OF QUANTUM-MECHANICAL POTENTIALS
    SNIEDER, R
    TARANTOLA, A
    PHYSICAL REVIEW A, 1989, 39 (07): : 3303 - 3309
  • [28] Quantum-mechanical calculations of magnesium aspartate-arginine structure and spectroscopic characteristics
    Marcoin, W
    Pasterny, K
    Wrzalik, R
    JOURNAL OF MOLECULAR STRUCTURE, 2005, 743 (1-3) : 85 - 92
  • [29] The generalized hybrid orbital method for combined quantum mechanical/molecular mechanical calculations: formulation and tests of the analytical derivatives
    Patricia Amara
    Martin J. Field
    Cristobal Alhambra
    Jiali Gao
    Theoretical Chemistry Accounts, 2000, 104 : 336 - 343
  • [30] The generalized hybrid orbital method for combined quantum mechanical/molecular mechanical calculations: formulation and tests of the analytical derivatives
    Amara, P
    Field, MJ
    Alhambra, C
    Gao, JL
    THEORETICAL CHEMISTRY ACCOUNTS, 2000, 104 (05) : 336 - 343