Overproduction, crystallization and preliminary X-ray crystallographic analysis of Escherichia coli tRNA N6-threonylcarbamoyladenosine dehydratase

被引:3
|
作者
Kim, Sunmin [1 ]
Kim, Keon Young [1 ]
Park, Jeong Kuk [1 ]
Lee, Byung Il [2 ]
Kim, Yun-Gon [3 ]
Park, SangYoun [1 ]
机构
[1] Soongsil Univ, Sch Syst Biomed Sci, Seoul 156743, South Korea
[2] Natl Canc Ctr, Res Inst, Div Convergence Technol, Biomol Funct Res Branch, Goyang 410769, Gyeonggi, South Korea
[3] Soongsil Univ, Dept Chem Engn, Seoul 156743, South Korea
关键词
PROTEIN; ACID;
D O I
10.1107/S2053230X14020883
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Escherichia coli tRNA N-6-threonylcarbamoyladenosine dehydratase (TcdA), previously called CsdL or YgdL, was overproduced and purified from E. coli and crystallized using polyethylene glycol 3350 as a crystallizing agent. X-ray diffraction data were collected to 2.70 angstrom resolution under cryoconditions using synchrotron X-rays. The crystals belonged to space group P2(1), with unit-cell parameters a = 65.4, b = 96.8, c = 83.3 angstrom, beta = 111.7 degrees. According to the Matthews coefficient, the asymmetric unit may contain up to four subunits of the monomeric protein, with a crystal volume per protein mass (V-M) of 2.12 angstrom(3) Da(-1) and 42.1% solvent content.
引用
收藏
页码:1517 / 1520
页数:4
相关论文
共 50 条
  • [41] Crystallization and preliminary X-ray crystallographic analysis of human autotaxin
    Inoue, Keigo
    Tanaka, Nobutada
    Haga, Arayo
    Yamasaki, Kyohei
    Umeda, Tomonobu
    Kusakabe, Yoshio
    Sakamoto, Yasumitsu
    Nonaka, Takamasa
    Deyashiki, Yoshihiro
    Nakamura, Kazuo T.
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2011, 67 : 450 - 453
  • [42] CRYSTALLIZATION AND PRELIMINARY-X-RAY CRYSTALLOGRAPHIC ANALYSIS OF THE SOYBEAN PROGLYCININ EXPRESSED IN ESCHERICHIA-COLI
    UTSUMI, S
    GIDAMIS, AB
    MIKAMI, B
    KITO, M
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1993, 233 (01) : 177 - 178
  • [43] CRYSTALLIZATION AND PRELIMINARY-X-RAY CRYSTALLOGRAPHIC DATA WITH ESCHERICHIA-COLI TRANSKETOLASE
    LITLECHILD, J
    TURNER, N
    HOBBS, G
    LILLY, M
    RAWAS, A
    WATSON, H
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1995, 51 : 1074 - 1076
  • [44] Protein-tRNA Agarose Gel Retardation Assays for the Analysis of the N6-threonylcarbamoyladenosine TcdA Function
    Fernandez, Francisco J.
    Gomez, Sara
    Navas-Yuste, Sergio
    Lopez-Estepa, Miguel
    Cristina Vega, M.
    [J]. JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2017, (124):
  • [45] The methyl group of the N6-methyl-N6-threonylcarbamoyladenosine in tRNA of Escherichia coli modestly improves the efficiency of the tRNA
    Qian, QA
    Curran, JF
    Björk, GR
    [J]. JOURNAL OF BACTERIOLOGY, 1998, 180 (07) : 1808 - 1813
  • [46] Expression, purification, crystallization and preliminary X-ray crystallographic analysis of Enpp6
    Morita, Junko
    Kato, Kazuki
    Mihara, Emiko
    Ishitani, Ryuichiro
    Takagi, Junichi
    Nishimasu, Hiroshi
    Aoki, Junken
    Nureki, Osamu
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 : 794 - 799
  • [47] Structural characteristics of E. coli YrdC suggest a role in the enzymatic biosynthesis of the tRNA modification N6-threonylcarbamoyladenosine
    Harris, Kimberly A.
    Jones, Victoria
    Bilbille, Yann
    Bobay, Benjamin G.
    Agris, Paul F.
    [J]. FASEB JOURNAL, 2011, 25
  • [48] MdaB from Escherichia coli:: cloning, purification, crystallization and preliminary X-ray analysis
    Adams, MA
    Iannuzzi, P
    Jia, Z
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2005, 61 : 235 - 238
  • [49] MraZ from Escherichia coli:: cloning, purification, crystallization and preliminary X-ray analysis
    Adams, MA
    Udell, CM
    Pal, GP
    Jia, ZC
    [J]. ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2005, 61 : 378 - 380
  • [50] Purification, crystallization and preliminary X-ray analysis of aspartokinase III from Escherichia coli
    Blanco, J
    Viola, RE
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 : 352 - 354