Soil Depth Determines the Composition and Diversity of Bacterial and Archaeal Communities in a Poplar Plantation

被引:45
|
作者
Feng, Huili [1 ]
Guo, Jiahuan [1 ]
Wang, Weifeng [1 ,2 ]
Song, Xinzhang [3 ]
Yu, Shuiqiang [1 ]
机构
[1] Nanjing Forestry Univ, Coinnovat Ctr Sustainable Forestry Southern China, Coll Biol & Environm, Nanjing 210037, Jiangsu, Peoples R China
[2] Chinese Acad Sci, Key Lab Watershed Geog Sci, Nanjing Inst Geog & Limnol, Nanjing 210008, Jiangsu, Peoples R China
[3] Zhejiang A&F Univ, State Key Lab Subtrop Silviculture, Hangzhou 311300, Zhejiang, Peoples R China
来源
FORESTS | 2019年 / 10卷 / 07期
基金
中国国家自然科学基金;
关键词
microbe; Illumina MiSeq sequencing; soil bacteria; soil archaea; Hongze lake basin; 16S RIBOSOMAL-RNA; MICROBIAL COMMUNITIES; VERRUCOMICROBIA; UPLAND; PH; CRENARCHAEOTA; OXIDATION; ABUNDANCE; PROFILES; SURFACE;
D O I
10.3390/f10070550
中图分类号
S7 [林业];
学科分类号
0829 ; 0907 ;
摘要
Understanding the composition and diversity of soil microorganisms that typically mediate the soil biogeochemical cycle is crucial for estimating greenhouse gas flux and mitigating global changes in plantation forests. Therefore, the objectives of this study were to investigate changes in diversity and relative abundance of bacteria and archaea with soil profiles and the potential factors influencing the vertical di ff erentiation of microbial communities in a poplar plantation. We investigated soil bacterial and archaeal community compositions and diversities by 16S rRNA gene Illumina MiSeq sequencing at di ff erent depths of a poplar plantation forest in Chenwei forest farm, Sihong County, Jiangsu, China. More than 882,422 quality- filtered 16S rRNA gene sequences were obtained from 15 samples, corresponding to 34 classified phyla and 68 known classes. Ten major bacterial phyla and two archaeal phyla were found. The diversity of bacterial and archaeal communities decreased with depth of the plantation soil. Analysis of variance (ANOVA) of relative abundance of microbial communities exhibited that Nitrospirae, Verrucomicrobia, Latescibacteria, GAL15, SBR1093, and Euryarchaeota had significant di ff erences at di ff erent depths. The transition zone of the community composition between the surface and subsurface occurred at 10- 20 cm. Overall, our findings highlighted the importance of depth with regard to the complexity and diversity of microbial community composition in plantation forest soils.
引用
收藏
页数:15
相关论文
共 50 条
  • [21] Composition of bacterial and archaeal communities during landfill refuse decomposition processes
    Song, Liyan
    Wang, Yangqing
    Zhao, Heping
    Long, David T.
    [J]. MICROBIOLOGICAL RESEARCH, 2015, 181 : 105 - 111
  • [23] Effects of the Application of Nutrients on Soil Bacterial Community Composition and Diversity in a Larix olgensis Plantation, Northeast China
    Cui, Jinyao
    Sun, Zhihu
    Wang, Zixuan
    Gong, Lifang
    [J]. SUSTAINABILITY, 2022, 14 (24)
  • [24] Diversity of endophytic bacterial communities in poplar grown under field conditions
    Ulrich, Kristina
    Ulrich, Andreas
    Ewald, Dietrich
    [J]. FEMS MICROBIOLOGY ECOLOGY, 2008, 63 (02) : 169 - 180
  • [25] Phenotypic and genotypic diversity of soil bacterial communities
    Dobrovol'skaya, TG
    Lysak, LV
    Zvyagintsev, DG
    [J]. EURASIAN SOIL SCIENCE, 2002, 35 : S68 - S77
  • [26] Variations in the diversity of soil bacterial and archaeal communities in response to different long-term fertilization regimes in maize fields
    Megyes, Melinda
    Borsodi, Andrea K.
    Arendas, Tamas
    Marialigeti, Karoly
    [J]. APPLIED SOIL ECOLOGY, 2021, 168
  • [27] Diversity and structure of bacterial and archaeal communities associated with the vulnerable sponge Halichondria cebimarensis
    Nascimento-Silva, Gabriel
    Costa, Carolina Mendes
    Lobo-Hajdu, Gisele
    Custodio, Marcio Reis
    Hardoim, Cristiane Cassiolato Pires
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2023, 116 (04): : 367 - 382
  • [28] Archaeal and bacterial communities of Xestospongia testudinaria and sediment differ in diversity, composition and predicted function in an Indonesian coral reef environment
    Moura Polonia, Ana Rita
    Richard Cleary, Daniel Francis
    Freitas, Rossana
    Marcial Gomes, Newton Carlos
    de Voogd, Nicole Joy
    [J]. JOURNAL OF SEA RESEARCH, 2017, 119 : 37 - 53
  • [29] Diversity and functionality of archaeal, bacterial and fungal communities in deep Archaean bedrock groundwater
    Purkamo, Lotta
    Kietavaimen, Riikka
    Miettinen, Hanna
    Sohlberg, Elina
    Kukkonen, Ilmo
    Itavaara, Merja
    Bomberg, Malin
    [J]. FEMS MICROBIOLOGY ECOLOGY, 2018, 94 (08)
  • [30] Diversity of archaeal and bacterial communities on exfoliated sandstone from Portchester Castle (UK)
    Zanardini, Elisabetta
    May, Eric
    Inkpen, Robert
    Cappitelli, Francesca
    Murrell, J. Colin
    Purdy, Kevin J.
    [J]. INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 2016, 109 : 78 - 87