A 2D Graphical Representation of Protein Sequence and Its Application

被引:0
|
作者
Zou, Sai [1 ,3 ]
Peng, Hui [2 ]
Wang, Lei [2 ,3 ]
Wang, Junfeng [3 ]
机构
[1] Xiamen Univ, Sch Informat Sci & Engn, Xiamen 361005, Fujian, Peoples R China
[2] Xiangtan Univ, Minist Educ, Key Lab Intelligent Comp & Informat Proc, Xiangtan 411105, Peoples R China
[3] Chongqing Coll Elect Engn, Sch Software Engn, Chongqing 401331, Peoples R China
关键词
Graphical Representation; Similarity/Dissimilarity; Protein Sequence; SUBCELLULAR-LOCALIZATION PREDICTION; DNA-SEQUENCES; NUMERICAL CHARACTERIZATION; SIMILARITY/DISSIMILARITY; ACIDS;
D O I
10.1166/jctn.2015.4035
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Proteins are important molecules that perform a diversity of functions in the biological system. In terms of the analysis of the innate structure of the protein sequence, a novel 2D graphical representation of protein sequences is proposed in this paper on the basis of the statistical and physicochemical properties of protein sequences. And then, a new numerical characterization of graphical curve which facilitates quantitative comparisons of protein sequences is given to analyze the similarity/dissimilarity of the nine ND5 protein sequences.
引用
收藏
页码:2369 / 2374
页数:6
相关论文
共 50 条
  • [21] Novel 2D graphical representation of DNA sequence based on dual nucleotides
    Qi, Zhaohui
    Qi, Xiaoqin
    CHEMICAL PHYSICS LETTERS, 2007, 440 (1-3) : 139 - 144
  • [22] Application of 2D graphic representation of protein sequence based on Huffman tree method
    Qi, Zhao-Hui
    Feng, Jun
    Qi, Xiao-Qin
    Li, Ling
    COMPUTERS IN BIOLOGY AND MEDICINE, 2012, 42 (05) : 556 - 563
  • [23] A Novel Graphical Representation of Protein Sequences and Its Application
    Liao, Bo
    Liao, Benyou
    Lu, Xinguo
    Cao, Zhi
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32 (12) : 2539 - 2544
  • [24] On 2D graphical representation of RNA secondary structure
    Zhang, Yusen
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, 2007, 57 (03) : 697 - 710
  • [25] New 2D graphical representation of DNA sequences
    Liao, B
    Wang, TM
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2004, 25 (11) : 1364 - 1368
  • [26] 2D GRAPHICAL REPRESENTATION OF DNA SEQUENCE BASED ON HORIZON LINES FROM A PROBABILISTIC VIEW
    Liu, Huili
    BIOSCIENCE JOURNAL, 2018, 34 (03): : 1344 - 1350
  • [27] 2-D graphical representation for characteristic sequences of DNA and its application
    Li, Chun
    Hu, Ji
    JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2006, 39 (03): : 292 - 296
  • [28] UC-Curve: A Highly Compact 2D Graphical Representation of Protein Sequences
    Li, Yushuang
    Liu, Qian
    Zheng, Xiaoqi
    He, Ping-an
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2014, 114 (06) : 409 - 415
  • [29] Similarity/Dissimilarity Studies of Protein Sequences Based on a New 2D Graphical Representation
    Yao, Yu-Hua
    Dai, Qi
    Li, Ling
    Nan, Xu-Ying
    He, Ping-An
    Zhang, Yao-Zhou
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2010, 31 (05) : 1045 - 1052
  • [30] H-L curve: A Novel 2D Graphical Representation of Protein Sequences
    Li, Yongfan
    Huang, Guohua
    Liao, Bo
    Liu, Zanbo
    MATCH-COMMUNICATIONS IN MATHEMATICAL AND IN COMPUTER CHEMISTRY, 2009, 61 (02) : 519 - 532