Cohnella pontilimi sp. nov., isolated from tidal-flat mud

被引:0
|
作者
Baek, Jihye [1 ]
Kim, Jong-Hwa [1 ]
Yoon, Jung-Hoon [2 ]
Lee, Jung-Sook [3 ]
Sukhoom, Ampaitip [4 ]
Kim, Wonyong [1 ]
机构
[1] Chung Ang Univ, Dept Microbiol, Coll Med, Seoul 06974, South Korea
[2] Sungkyunkwan Univ, Dept Food Sci & Biotechnol, Suwon, South Korea
[3] Korean Collect Type Cultures, Inst Biosci & Biotechnol, Jeongeup, South Korea
[4] Prince Songkla Univ, Dept Microbiol, Fac Sci, Hat Yai 90112, Thailand
关键词
Cohnella pontilimi; Paenibacillaceae; Tidal-flat mud; 16S rRNA gene sequence; Genome; THIN-LAYER-CHROMATOGRAPHY; XYLANOLYTIC BACTERIUM; ROOT-NODULES; RHIZOSPHERE; ANNOTATION; SEPARATION; ALGORITHM; SOIL;
D O I
10.1007/s00203-021-02266-x
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-positive, aerobic, endospore-forming, rod-shaped bacterial strain, CAU 1483( T), was isolated from tidal-flat mud in the Republic of Korea. It grew optimally at 30 degrees C, in a pH 7.0 medium with 2% (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain CAU 1483( T) formed a separate clade within Paenibacillaceae together with members of the genus Cohnella. Strain CAU 1483( T) exhibited the highest 16S rRNA gene sequence similarity (97.1%) to C. candidum 18JY8-7( T). Whole genome of strain CAU 1483( T) was 4.29 Mb in size with a 53.7 mol% G + C content, and included 4046 coding sequences and included 4046 coding sequences, some of which associated with stress response. The average nucleotide identity and digital DNA-DNA hybridization similarity between strain CAU 1483( T) and related members of the genus Cohnella were 71.8-74.9% and 22.6-33.9%, respectively. The major respiratory quinone present in this strain was menaquinone-7. Strain CAU 1483( T) contained anteiso-C-15:0 and iso-C-16:0 as the major fatty acids, while its polar lipids consisted of phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, lysyl-phosphatidylglycerol, phosphatidylcholine, three unidentified aminophospholipids, two unidentified lipids and an unidentified phospholipid. Peptidoglycan type was A1 gamma meso-Dpm. On the basis of taxonomic characterization, strain CAU 1483( T) constitutes a novel species, for which the name Cohnella pontilimi sp. nov. is proposed. The type strain of this novel species is CAU 1483( T) (= KCTC 43047( T) = NBRC 113953( T)).
引用
收藏
页码:2445 / 2451
页数:7
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