ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

被引：263
|
作者：
Corpet, F
Servant, F
Gouzy, J
Kahn, D
机构：
[1] INRA, CNRS, Lab Genet Cellulaire, F-31326 Castanet Tolosan, France
[2] INRA, CNRS, Lab Biol Mol Relat Plantes Microorganismes, F-31326 Castanet Tolosan, France
来源：
NUCLEIC ACIDS RESEARCH | 2000年 / 28卷 / 01期
关键词：
D O I：
10.1093/nar/28.1.267
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html), ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse.inra.fr/prodomCG.html). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families,domain arrangements of sub-families and links to Pfam-A.
引用
收藏
页码：267 / 269
页数：3
相关论文
共 50 条
  • [21] Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept
    Saltykova, Assia
    Mattheus, Wesley
    Bertrand, Sophie
    Roosens, Nancy H. C.
    Marchal, Kathleen
    De Keersmaecker, Sigrid C. J.
    FRONTIERS IN MICROBIOLOGY, 2019, 10
  • [22] Genome-wide analysis of the WW domain-containing protein genes in silkworm and their expansion in eukaryotes
    Meng, Gang
    Dai, Fangyin
    Tong, Xiaoling
    Li, Niannian
    Ding, Xin
    Song, Jiangbo
    Lu, Cheng
    MOLECULAR GENETICS AND GENOMICS, 2015, 290 (03) : 807 - 824
  • [23] Genome-wide analysis of the WW domain-containing protein genes in silkworm and their expansion in eukaryotes
    Gang Meng
    Fangyin Dai
    Xiaoling Tong
    Niannian Li
    Xin Ding
    Jiangbo Song
    Cheng Lu
    Molecular Genetics and Genomics, 2015, 290 : 807 - 824
  • [24] Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
    Lees, Jonathan G.
    Lee, David
    Studer, Romain A.
    Dawson, Natalie L.
    Sillitoe, Ian
    Das, Sayoni
    Yeats, Corin
    Dessailly, Benoit H.
    Rentzsch, Robert
    Orengo, Christine A.
    NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) : D240 - D245
  • [25] Analysis of genetic variants in protein-coding genes of Aoluguya reindeer based on the whole-genome data
    Yi, Wenfeng
    Hu, Mingyue
    Shi, Lulu
    Li, Ting
    Sun, Hao
    Qin, Lihong
    Yan, Shouqing
    ANIMAL GENETICS, 2024, 55 (02) : 296 - 298
  • [26] Whole genome level analysis of the DEATH protein superfamily in sheep (Ovis aries) and their coordination relationship in regulating lactation
    Gai, Zhongchao
    Hu, Songhao
    He, Yujiao
    Gong, Guoli
    Zhao, Jieqiong
    CHEMICAL AND BIOLOGICAL TECHNOLOGIES IN AGRICULTURE, 2023, 10 (01)
  • [27] Whole genome level analysis of the DEATH protein superfamily in sheep (Ovis aries) and their coordination relationship in regulating lactation
    Zhongchao Gai
    Songhao Hu
    Yujiao He
    Guoli Gong
    Jieqiong Zhao
    Chemical and Biological Technologies in Agriculture, 10
  • [28] Whole Genome Sequencing Analysis of Bacillus thuringiensis GR007 Reveals Multiple Pesticidal Protein Genes
    Pacheco, Sabino
    Gomez, Isabel
    Chinas, Marcos
    Sanchez, Jorge
    Soberon, Mario
    Bravo, Alejandra
    FRONTIERS IN MICROBIOLOGY, 2021, 12
  • [29] Genome-wide identification and expression analysis of the BTB domain-containing protein gene family in tomato
    Li, Jinhua
    Su, Xiaoxing
    Wang, Yinlei
    Yang, Wei
    Pan, Yu
    Su, Chenggang
    Zhang, Xingguo
    GENES & GENOMICS, 2018, 40 (01) : 1 - 15
  • [30] Genome-wide identification and expression analysis of the BTB domain-containing protein gene family in tomato
    Jinhua Li
    Xiaoxing Su
    Yinlei Wang
    Wei Yang
    Yu Pan
    Chenggang Su
    Xingguo Zhang
    Genes & Genomics, 2018, 40 : 1 - 15
12345