A Bayesian Approach for Extracting Fluorescence Lifetimes from Sparse Data Sets and Its Significance for Imaging Experiments

被引:5
|
作者
Santra, Kalyan [1 ,2 ]
Smith, Emily A. [1 ,2 ]
Song, Xueyu [1 ,2 ]
Petrich, Jacob W. [1 ,2 ]
机构
[1] Iowa State Univ, Dept Chem, Ames, IA 50011 USA
[2] US DOE, Ames Lab, Ames, IA 50011 USA
关键词
CORRELATION SPECTROSCOPY DATA; RESONANCE ENERGY-TRANSFER; MAXIMUM-LIKELIHOOD; SPATIAL-RESOLUTION; SINGLE-MOLECULE; PHASOR APPROACH; MICROSCOPY; MODEL;
D O I
10.1111/php.13057
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The measurement of fluorescence lifetimes, especially in small sample volumes, presents the dual challenge of probing a small number of fluorophores and fitting the concomitant sparse data set to the appropriate excited-state decay function. A common method of analysis, such as the maximum likelihood (ML) technique, assumes a uniform probability distribution of the parameters describing the fluorescence decay function. An improvement is thus suggested by implementing a suitable nonuniform distribution, as is provided by a Bayesian framework, where the distribution of parameters is obtained from both their prior knowledge and the evidence-based likelihood of an event for a given set of parameters. We have also considered the Dirichlet prior distribution, whose mathematical form enables analytical solutions of the fitting parameters to be rapidly obtained. If Gaussian and exponential prior distributions are judiciously chosen, they reproduce the experimental target lifetime to within 20% with as few as 20 total photon counts for the data set, as does the Dirichlet prior distribution. But because of the analytical solutions afforded by the Dirichlet prior distribution, it is proposed to employ a Dirichlet prior to search parameter space rapidly to provide, if necessary, appropriate parameters for subsequent employment of a Gaussian or exponential prior distribution.
引用
收藏
页码:773 / 779
页数:7
相关论文
共 32 条
  • [31] Reconstruction of sea-surface temperatures from assemblages of planktonic foraminifera: multi-technique approach based on geographically constrained calibration data sets and its application to glacial Atlantic and Pacific Oceans
    Kucera, M
    Weinelt, M
    Kiefer, T
    Pflaumann, U
    Hayes, A
    Weinelt, M
    Chen, MT
    Mix, AC
    Barrows, TT
    Cortijo, E
    Duprat, J
    Juggins, S
    Waelbroeck, C
    QUATERNARY SCIENCE REVIEWS, 2005, 24 (7-9) : 951 - 998
  • [32] EP 1645-AN ANTI-CD4MAB-FRAGMENT - FOR IMAGING CHRONIC INFLAMMATION IN PATIENTS WITH ACTIVE RHEUMATOID ARTHRITIS - SAFETY EVALUATION OF CARDIOVASCULAR DATA FROM A FIRST IN MAN BAYESIAN APPROACH CLINICAL TRIAL
    Siegert, Joachim
    Hesse, Swen
    Schindler, Christoph
    Idelevich, Evgeny
    Hillger, Christiane
    Steinhoff, Karen G.
    Wirkner, Kerstin
    Pigla, Ullrich
    Sabri, Osama
    Kirch, Wilhelm
    JOURNAL OF CLINICAL PHARMACOLOGY, 2009, 49 (09): : 1125 - 1125