ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli

被引:76
|
作者
Agostini, Federico [1 ,2 ]
Cirillo, Davide [1 ,2 ]
Maria Livi, Carmen [1 ,2 ]
Delli Ponti, Riccardo [1 ,2 ]
Gaetano Tartaglia, Gian [1 ,2 ]
机构
[1] Ctr Genom Regulat CRG, Barcelona 08003, Spain
[2] UPF, Barcelona 08003, Spain
基金
欧洲研究理事会;
关键词
PROTEIN SOLUBILITY; AGGREGATION; SEQUENCES;
D O I
10.1093/bioinformatics/btu420
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A Summary: Here we introduce ccSOL omics, a webserver for largescale calculations of protein solubility. Our method allows (i) proteome-wide predictions; (ii) identification of soluble fragments within each sequences; (iii) exhaustive single-point mutation analysis. Results: Using coil/disorder, hydrophobicity, hydrophilicity, beta-sheet and alpha-helix propensities, we built a predictor of protein solubility. Our approach shows an accuracy of 79% on the training set (36990 Target Track entries). Validation on three independent sets indicates that ccSOL omics discriminates soluble and insoluble proteins with an accuracy of 74% on 31760 proteins sharing <30% sequence similarity.
引用
收藏
页码:2975 / 2977
页数:3
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