Genome-Wide Identification and Characterization of the bHLH Transcription Factor Family in Pepper (Capsicum annuumL.)

被引：43
|
作者：
Zhang, Zhishuo [1 ,2 ]
Chen, Juan [2 ]
Liang, Chengliang [2 ]
Liu, Feng [2 ]
Hou, Xilin [1 ]
Zou, Xuexiao [1 ,2 ,3 ]
机构：
[1] Nanjing Agr Univ, Minist Agr, Key Lab Biol & Germplasm Enhancement Hort Crops E, State Key Lab Crop Genet & Germplasm Enhancement, Nanjing, Peoples R China
[2] Hunan Vegetable Res Inst, Changsha, Peoples R China
[3] Hunan Agr Univ, Coll Hort, Changsha, Peoples R China
来源：
FRONTIERS IN GENETICS | 2020年 / 11卷
关键词：
genome-wide; pepper; bHLH transcription factor family; phylogenetic relationships; expression analysis; LOOP-HELIX PROTEIN; ARABIDOPSIS; GENES; RICE; ENCODES; DROUGHT; CLASSIFICATION; ORGANIZATION; DUPLICATIONS; PIGMENTATION;
D O I：
10.3389/fgene.2020.570156
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Plant basic helix-loop-helix (bHLH) transcription factors are involved in the regulation of various biological processes in plant growth, development, and stress response. However, members of this important transcription factor family have not been systematically identified and analyzed in pepper (Capsicum annuumL.). In this study, we identified 122CabHLHgenes in the pepper genome and renamed them based on their chromosomal locations.CabHLHswere divided into 21 subfamilies according to their phylogenetic relationships, and genes from the same subfamily had similar motif compositions and gene structures. Sixteen pairs of tandem and segmental duplicated genes were detected in the CabHLH family.Cis-elements identification and expression analysis of theCabHLHsrevealed that they may be involved in plant development and stress responses. This study is the first comprehensive analysis of theCabHLHgenes and will serve as a reference for further characterization of their molecular functions.
引用
收藏
页数：14
相关论文
共 50 条
  • [21] Genome-wide identification of the B3 transcription factor family in pepper (Capsicum annuum) and expression patterns during fruit ripening
    Wang, Tao
    Long, Cha
    Chang, Meixia
    Wu, Yuan
    Su, Shixian
    Wei, Jingjiang
    Jiang, Suyan
    Wang, Xiujun
    He, Jianwen
    Xing, Dan
    He, Yangbo
    Ran, Yaoqi
    Li, Wei
    [J]. SCIENTIFIC REPORTS, 2024, 14 (01)
  • [22] Genome-wide identification and characterization of the DREB transcription factor gene family in mulberry
    Liu, X. Q.
    Zhu, J. J.
    Wei, C. J.
    Guo, Q.
    Bian, C. K.
    Xiang, Z. H.
    Zhao, A. C.
    [J]. BIOLOGIA PLANTARUM, 2015, 59 (02) : 253 - 265
  • [23] Genome-wide identification, characterization, and validation of the bHLH transcription factors in grass pea
    Alsamman, Alsamman M.
    Abdelsattar, Mohamed
    El Allali, Achraf
    Radwan, Khaled H.
    Nassar, Ahmed E.
    Mousa, Khaled H.
    Hussein, Ahmed
    Mokhtar, Morad M.
    Abd El-Maksoud, Mamdouh M.
    Istanbuli, Tawffiq
    Kehel, Zakaria
    Hamwieh, Aladdin
    [J]. FRONTIERS IN GENETICS, 2023, 14
  • [24] Biochemical Characterization of Traditional Varieties of Sweet Pepper (Capsicum annuumL.) of the Campania Region, Southern Italy
    Fratianni, Florinda
    d'Acierno, Antonio
    Cozzolino, Autilia
    Spigno, Patrizia
    Riccardi, Riccardo
    Raimo, Francesco
    Pane, Catello
    Zaccardelli, Massimo
    Lombardo, Valentina Tranchida
    Tucci, Marina
    Grillo, Stefania
    Coppola, Raffaele
    Nazzaro, Filomena
    [J]. ANTIOXIDANTS, 2020, 9 (06)
  • [25] Genome-Wide Identification, Characterization, and Expression Analysis of the DMP Gene Family in Pepper (Capsicum annuum L.)
    Zhang, Yamin
    Zhang, Doudou
    Li, Xinru
    He, Jie
    Chen, Zhuona
    Xu, Nan
    Zhong, Yike
    Yao, Shuqian
    Qu, Lingbo
    Li, Bo
    Azhar, Muhammad Tehseen
    Li, Wenyue
    Shang, Haihong
    [J]. HORTICULTURAE, 2024, 10 (07)
  • [26] Genome-wide identification of the bHLH transcription factor family in Rosa persica and response to low-temperature stress
    Zhuang, Yueying
    Zhou, Lijun
    Geng, Lifang
    Jiang, Lv
    Sui, Yunji
    Luo, Le
    Pan, Huitang
    Zhang, Qixiang
    Yu, Chao
    [J]. PEERJ, 2024, 12
  • [27] Genome-wide identification of the tea plant bHLH transcription factor family and discovery of candidate regulators of trichome formation
    Renjian Liu
    Yuyuan Wang
    Song Tang
    Jiarong Cai
    Shaoqun Liu
    Peng Zheng
    Binmei Sun
    [J]. Scientific Reports, 11
  • [28] Genome-wide identification of the tea plant bHLH transcription factor family and discovery of candidate regulators of trichome formation
    Liu, Renjian
    Wang, Yuyuan
    Tang, Song
    Cai, Jiarong
    Liu, Shaoqun
    Zheng, Peng
    Sun, Binmei
    [J]. SCIENTIFIC REPORTS, 2021, 11 (01)
  • [29] Genome-wide identification and characterization of bHLH family genes from Ginkgo biloba
    Xian Zhou
    Yongling Liao
    Soo-Un Kim
    Zexiong Chen
    Gongping Nie
    Shuiyuan Cheng
    Jiabao Ye
    Feng Xu
    [J]. Scientific Reports, 10
  • [30] Genome-wide identification of the potato WRKY transcription factor family
    Zhang, Chao
    Wang, Dongdong
    Yang, Chenghui
    Kong, Nana
    Shi, Zheng
    Zhao, Peng
    Nan, Yunyou
    Nie, Tengkun
    Wang, Ruoqiu
    Ma, Haoli
    Chen, Qin
    [J]. PLOS ONE, 2017, 12 (07):
12345