Seascape genetics of saithe (Pollachius virens) across the North Atlantic using single nucleotide polymorphisms

被引:15
|
作者
Saha, Atal [1 ]
Hauser, Lorenz [2 ]
Kent, Matthew [3 ]
Planque, Benjamin [1 ,4 ]
Neat, Francis [5 ]
Kirubakaran, Tina Graceline [3 ]
Huse, Irene [6 ]
Homrum, Eydna I. [7 ]
Fevolden, Svein-Erik [8 ]
Lien, Sigbjorn [3 ]
Johansen, Torild [1 ]
机构
[1] Inst Marine Res, Tromso Dept, N-9294 Tromso, Norway
[2] Univ Washington, Sch Aquat & Fishery Sci, Seattle, WA 98195 USA
[3] Ctr Integrat Genet CIGENE, NMBU, Dept Anim & Aquacultural Sci IHA, N-1432 As, Norway
[4] Hjort Ctr Marine Ecosyst Dynam, N-5817 Bergen, Norway
[5] Marine Scotland Sci, Marine Lab, Aberdeen AB11 9DB, Scotland
[6] Inst Marine Res, NO-5817 Bergen, Norway
[7] Faroe Marine Res Inst, FO-100 Torshavn, Faroe Islands, Denmark
[8] UiT Arctic Univ Norway, Dept Arctic & Marine Biol, N-9037 Tromso, Norway
关键词
gene flow; isolation by distance; landscape genetics; RAD tag sequencing; COD GADUS-MORHUA; POPULATION-GENETICS; MARINE; MIGRATION; FISH; DIVERSITY; DISCOVERY; BARRIERS; REVEALS; WATER;
D O I
10.1093/icesjms/fsv139
中图分类号
S9 [水产、渔业];
学科分类号
0908 ;
摘要
The identification of isolated populations in widely distributed marine species is often impeded by low levels of genetic differentiation. However, modern genetic approaches now allow for the efficient detection of potentially large numbers of novel genetic variations, thereby improving the power to identify biologically meaningful management units. To investigate the genetic structuring of saithe (Pollachius virens L.), we applied seascape genetic approaches to 131 single nucleotide polymorphism loci genotyped in 584 fish collected from 11 locations across the North Atlantic. Wombling analysis and the Monmonier algorithm revealed four genetic clusters (Barents Sea, Central Northeast Atlantic, Rockall, and Canada) across the species distribution range. These results imply that genetic structuring in saithe maybe influenced by abiotic factors such as geographical distance, and bathymetry aswell as biotic factors such as sex-biased migration, and natal homing. The results suggest a potential mismatch between management and biological units across the Northeast Atlantic, which may have implications for sustainable exploitation of the species.
引用
收藏
页码:2732 / 2741
页数:10
相关论文
共 50 条
  • [31] Sequencing genes in silico using single nucleotide polymorphisms
    Xinyi Cindy Zhang
    Bo Zhang
    Shuying Sue Li
    Xin Huang
    John A Hansen
    Lue Ping Zhao
    BMC Genetics, 13
  • [32] Sequencing genes in silico using single nucleotide polymorphisms
    Zhang, Xinyi Cindy
    Zhang, Bo
    Li, Shuying Sue
    Huang, Xin
    Hansen, John A.
    Zhao, Lue Ping
    BMC GENETICS, 2012, 13
  • [33] On genetics, inflammation, and abdominal aortic aneurysm - Can single nucleotide polymorphisms predict the outcome?
    Marian, AJ
    CIRCULATION, 2001, 103 (18) : 2222 - 2224
  • [34] Individual assignment of Atlantic bluefin tuna in the northwestern Atlantic Ocean using single nucleotide polymorphisms reveals an increasing proportion of migrants from the eastern Atlantic Ocean
    Puncher, G. N.
    Hanke, A.
    Busawon, D.
    Sylvester, E. V. A.
    Golet, W.
    Hamilton, L. C.
    Pavey, S. A.
    CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES, 2022, 79 (01) : 111 - 123
  • [35] Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions
    Stuart, Katarina C.
    Edwards, Richard J.
    Sherwin, William B.
    Rollins, Lee A.
    MOLECULAR BIOLOGY AND EVOLUTION, 2023, 40 (03)
  • [36] The distribution of single nucleotide polymorphisms across consecutive exons and introns of the human genome
    Fraszczak, Magdalena
    Liu, Jakub
    Mielczarek, Magda
    Dobosz, Paula
    Szyda, Joanna
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1574 - 1575
  • [37] Genotyping Single Nucleotide Polymorphisms (SNPs) Across Species in Old World Monkeys
    Malhi, Ripan S.
    Trask, Jessica Satkoski
    Shattuck, Milena
    Johnson, Jesse
    Chakraborty, Debrapriyo
    Kanthaswamy, Sree
    Ramakrishnan, Uma
    Smith, David Glenn
    AMERICAN JOURNAL OF PRIMATOLOGY, 2011, 73 (10) : 1031 - 1040
  • [38] Using single nucleotide polymorphisms as a means to understanding the pathophysiology of asthma
    Palmer, LJ
    Cookson, WOCM
    RESPIRATORY RESEARCH, 2001, 2 (02): : 102 - 112
  • [39] Evaluation of Japanese potatoes using single nucleotide polymorphisms (SNPs)
    Igarashi, Toshiya
    Tsuyama, Mutsuo
    Ogawa, Keiichi
    Koizumi, Emiko
    Sanetomo, Rena
    Hosaka, Kazuyoshi
    MOLECULAR BREEDING, 2019, 39 (01)
  • [40] Evaluation of Japanese potatoes using single nucleotide polymorphisms (SNPs)
    Toshiya Igarashi
    Mutsuo Tsuyama
    Keiichi Ogawa
    Emiko Koizumi
    Rena Sanetomo
    Kazuyoshi Hosaka
    Molecular Breeding, 2019, 39