A hypothesis concerning diffusion-limited protein-ligand interactions

被引:30
|
作者
van Holde, KE [1 ]
机构
[1] Oregon State Univ, Dept Biochem & Biophys, Corvallis, OR 97331 USA
关键词
kinetics; binding; oxygen; myoglobin; enzymes;
D O I
10.1016/S0301-4622(02)00176-X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A simple assumption allows the prediction of the numerical value for a 'universal' limiting kinetic rate for wholly diffusion-limited reactions between small neutral molecules and macromolecules. This prediction is compared with appropriate experimental data for binding of ligands to myoglobin and to enzymes. It is shown that in the absence of electrostatic effects, this limit is approached but not exceeded. The model also makes very specific predictions concerning the viscosity and temperature dependence of such reactions. (C) 2002 Elsevier Science B.V. All rights reserved.
引用
下载
收藏
页码:249 / 254
页数:6
相关论文
共 50 条
  • [31] Analysis of protein-ligand interactions by fluorescence polarization
    Rossi, Ana M.
    Taylor, Colin W.
    NATURE PROTOCOLS, 2011, 6 (03) : 365 - 387
  • [32] Quantum computational quantification of protein-ligand interactions
    Kirsopp, Josh J. M.
    Di Paola, Cono
    Manrique, David Zsolt
    Krompiec, Michal
    Greene-Diniz, Gabriel
    Guba, Wolfgang
    Meyder, Agnes
    Wolf, Detlef
    Strahm, Martin
    Ramo, David Munoz
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2022, 122 (22)
  • [33] DIFFUSION-LIMITED PERMEATION
    BENAVRAHAM, D
    FRISCH, HL
    PHYSICAL REVIEW A, 1989, 40 (01): : 505 - 508
  • [34] THERMODYNAMICS OF PROTEIN-LIGAND INTERACTIONS - CALORIMETRIC APPROACHES
    HINZ, HJ
    ANNUAL REVIEW OF BIOPHYSICS AND BIOENGINEERING, 1983, 12 : 285 - 317
  • [35] Calorimetric studies of protein-ligand interactions.
    Windsor, WT
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1997, 214 : 208 - COMP
  • [36] PROTEIN-LIGAND INTERACTIONS - ENERGETICS STRUCTURE FUNCTION
    HINZ, HJ
    HOPPE-SEYLERS ZEITSCHRIFT FUR PHYSIOLOGISCHE CHEMIE, 1978, 359 (09): : 1042 - 1042
  • [37] Hyperpolarized Water to Study Protein-Ligand Interactions
    Chappuis, Quentin
    Milani, Jonas
    Vuichoud, Basile
    Bornet, Aurelien
    Gossert, Alvar D.
    Bodenhausen, Geoffrey
    Jannin, Sami
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2015, 6 (09): : 1674 - 1678
  • [38] An intrinsic FRET sensor of protein-ligand interactions
    Gleason, Patrick R.
    Kelly, Patrick, I
    Grisingher, Dominic W.
    Mills, Jeremy H.
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2020, 18 (21) : 4079 - 4084
  • [39] Specificity and promiscuity in protein-ligand and protein-protein interactions
    Colman, PM
    Smith, BJ
    AUSTRALIAN JOURNAL OF CHEMISTRY, 2003, 56 (08) : 763 - 767
  • [40] Free energy calculations of protein-ligand interactions
    de Ruiter, Anita
    Oostenbrink, Chris
    CURRENT OPINION IN CHEMICAL BIOLOGY, 2011, 15 (04) : 547 - 552