The UCSC Genome Browser database: 2021 update

被引：303

作者：

Gonzalez, Jairo Navarro ^{[1
]}

Zweig, Ann S. ^{[1
]}

Speir, Matthew L. ^{[1
]}

Schmelter, Daniel ^{[1
]}

Rosenbloom, Kate R. ^{[1
]}

Raney, Brian J. ^{[1
]}

Powell, Conner C. ^{[1
]}

Nassar, Luis R. ^{[1
]}

Maulding, Nathan D. ^{[1
]}

Lee, Christopher M. ^{[1
]}

Lee, Brian T. ^{[1
]}

Hinrichs, Angie S. ^{[1
]}

Fyfe, Alastair C. ^{[1
]}

Fernandes, Jason D. ^{[1
]}

Diekhans, Mark ^{[1
]}

Clawson, Hiram ^{[1
]}

Casper, Jonathan ^{[1
]}

Benet-Pages, Anna ^{[1
,2
]}

Barber, Galt P. ^{[1
]}

Haussler, David ^{[1
,3
]}

Kuhn, Robert M. ^{[1
]}

Haeussler, Maximilian ^{[1
]}

Kent, W. James ^{[1
]}

机构：

[1] Univ Calif Santa Cruz, Genom Inst, Santa Cruz, CA 95064 USA

[2] Med Genet Ctr MGZ, Munich, Germany

[3] Univ Calif Santa Cruz, Howard Hughes Med Inst, Santa Cruz, CA 95064 USA

来源：

NUCLEIC ACIDS RESEARCH | 2021年 / 49卷 / D1期

基金：

美国国家卫生研究院;

关键词：

READ ALIGNMENT; REFERENCE SEQUENCE; PROVIDES; SYSTEM;

D O I：

10.1093/nar/gkaa1070

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become available, new modes of display are required to accommodate new technologies. New features released this past year include a Hi-C heatmap display, a phased family trio display for VCF files, and various track visualization improvements. Striving to keep data up-to-date, new updates to gene annotations include GENCODE Genes, NCBI RefSeq Genes, and Ensembl Genes. New data tracks added for human and mouse genomes include the ENCODE registry of candidate cis-regulatory elements, promoters from the Eukaryotic Promoter Database, and NCBI RefSeq Select and Matched Annotation from NCBI and EMBL-EBI (MANE). Within weeks of learning about the outbreak of coronavirus, UCSC released a genome browser, with detailed annotation tracks, for the SARS-CoV-2 RNA reference assembly.

引用

页码：D1046 / D1057

页数：12

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