Development of computational model for cell dose and DNA damage quantification of multicellular system

被引:10
|
作者
Liu, Ruirui [1 ,2 ]
Zhao, Tianyu [2 ]
Swat, Maciej H. [3 ]
Reynoso, Francisco J. [2 ]
Higley, Kathryn A. [1 ]
机构
[1] Oregon State Univ, Sch Nucl Sci & Engn, Corvallis, OR 97331 USA
[2] Washington Univ, Dept Radiat Oncol, Sch Med, St Louis, MO 63130 USA
[3] Indiana Univ, Biocomplex Inst, Bloomington, IN USA
关键词
Geant4; Geant4-DNA; multicellular model; cellular dose; DNA damage; computational model; Monte Carlo simulation; MONTE-CARLO-SIMULATION; TRACK-STRUCTURE; IONIZING-RADIATION; TUMOR SPHEROIDS; STRAND BREAKS; LIQUID WATER; GEANT4-DNA; IRRADIATION; INDUCTION; ALGORITHM;
D O I
10.1080/09553002.2019.1642537
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Purpose: The aim of this study is to build a computational model to investigate the cell dose and cell DNA damage distribution of a multicellular tissue system under the irradiation. Materials and methods: In this work, we developed a computational model for quantifying cell dose and double strand break (DSB) number in a multicellular system by simulating the radiation transport in 2D and 3D cell culture. The model was based on an open-source radiation transport package, Geant4 with Geant4-DNA physics. First, the computational multicellular system was created using a developed program, CelllMaker. Second, the radiation transport simulation for cells was conducted using Geant4 package with the Geant4-DNA physics to obtain the cellular dose and cellular DSB yield. Results: Using the method described in this work, it is possible to obtain the cellular dose and DNA damage simultaneously. The developed model provides a solution for quantifying the cellular dose and cellular DNA damage which are not easily determined in a radiobiological experiment. Conclusions: With limited validation data for the model, this preliminary study provides a roadmap for building a comprehensive toolkit for simulating cellular dose and DNA damage of multicellular tissue systems.
引用
收藏
页码:1484 / 1497
页数:14
相关论文
共 50 条
  • [31] Development of human cell biosensor system for genotoxicity detection based on DNA damage-induced gene expression
    Zager, Valerija
    Cemazar, Maja
    Hreljac, Irena
    Lah, Tamara T.
    Sersa, Gregor
    Filipic, Metka
    RADIOLOGY AND ONCOLOGY, 2010, 44 (01) : 42 - 51
  • [32] Different Length (DL) qPCR for Quantification of Cell Killing by UV-induced DNA Damage
    Rudi, Knut
    Hagen, Irina
    Johnsrud, Bente Carina
    Skjefstad, Guro
    Tryland, Ingun
    INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2010, 7 (09) : 3376 - 3381
  • [33] A computational model of the DNA damage-induced IKK/NF-κB pathway reveals a critical dependence on irradiation dose and PARP-1
    Konrath, Fabian
    Willenbrock, Michael
    Busse, Dorothea
    Scheidereit, Claus
    Wolf, Jana
    ISCIENCE, 2023, 26 (10)
  • [34] Development of a DNA damage-induced senescence model in osteoarthritic chondrocytes
    Georget, Melina
    Defois, Anais
    Guiho, Romain
    Bon, Nina
    Allain, Sophie
    Boyer, Cecile
    Halgand, Boris
    Waast, Denis
    Grimandi, Gael
    Fouasson-Chailloux, Alban
    Guicheux, Jerome
    Vinatier, Claire
    AGING-US, 2023, 15 (17): : 8576 - 8593
  • [35] Method development in assessing DNA damage in model bacterium by engineered nanoparticles
    Thu Ha Nguyen
    Jacob, Lisa
    Murphy, Catherine
    Haynes, Christy
    Feng, Vivian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2016, 251
  • [36] DNA damage responses in the aged hematopoietic stem cell system.
    Nattamai, K. J.
    Daria, D.
    Geiger, H.
    ENVIRONMENTAL AND MOLECULAR MUTAGENESIS, 2006, 47 (06) : 404 - 404
  • [37] A simple model system for age-dependent DNA damage and cancer
    Madia, F.
    Gattazzo, C.
    Fabrizio, P.
    Longo, V. D.
    MECHANISMS OF AGEING AND DEVELOPMENT, 2007, 128 (01) : 45 - 49
  • [38] Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes
    Goldman, GH
    Kafer, E
    FUNGAL GENETICS AND BIOLOGY, 2004, 41 (04) : 428 - 442
  • [39] Development of a novel computational technique to create DNA and cell geometrical models for Geant4-DNA
    Chatzipapas, Konstantinos P.
    Tran, Hoang Ngoc
    Dordevic, Milos
    Sakata, Dousatsu
    Incerti, Sebastien
    Visvikis, Dimitris
    Bert, Julien
    PHYSICA MEDICA-EUROPEAN JOURNAL OF MEDICAL PHYSICS, 2024, 127
  • [40] A COMPUTATIONAL MODEL OF THE DYNAMICS BETWEEN CELL DAMAGE AND CELL REPAIR, IN THE PRESENCE OF OXIDATIVE STRESS AND MECHANICAL DEFORMATION
    Jagannathan, N. S.
    Gefen, A.
    Tucker-Kellogg, L.
    WOUND REPAIR AND REGENERATION, 2015, 23 (04) : A13 - A14