Statistical mechanics of interacting metabolic networks

被引:7
|
作者
Fernandez-de-Cossio-Diaz, Jorge [1 ,2 ]
Mulet, Roberto [2 ,3 ]
机构
[1] Ctr Mol Immunol, Syst Biol Dept, Calle 216 Esq 15,POB 16040, Havana 11600, Cuba
[2] Univ Havana, Phys Fac, Dept Theoret Phys, Grp Complex Syst & Stat Phys, Havana 10400, Cuba
[3] IIGM, Turin, Italy
基金
欧盟地平线“2020”;
关键词
LACTATE METABOLISM; EVOLUTION; BRAIN; COOPERATION; COMPETITION; MODEL; FLUX;
D O I
10.1103/PhysRevE.101.042401
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We cast the metabolism of interacting cells within a statistical mechanics framework considering both the actual phenotypic capacities of each cell and its interaction with its neighbors. Reaction fluxes will be the components of high-dimensional spin vectors, whose values will be constrained by the stochiometry and the energy requirements of the metabolism. Within this picture, finding the phenotypic states of the population turns out to be equivalent to searching for the equilibrium states of a disordered spin model. We provide a general solution of this problem for arbitrary metabolic networks and interactions. We apply this solution to a simplified model of metabolism and to a complex metabolic network, the central core of Escherichia coli, and demonstrate that the combination of selective pressure and interactions defines a complex phenotypic space. We also present numerical results for cells fixed in a grid. These results reproduce the qualitative picture discussed for the mean-field model. Cells may specialize in producing or consuming metabolites complementing each other, and this is described by an equilibrium phase space with multiple minima, like in a spin-glass model.
引用
收藏
页数:13
相关论文
共 50 条
  • [41] Interactions in economic models: Statistical mechanics and networks
    Müge Ozman
    Mind & Society, 2005, 4 (2) : 223 - 238
  • [42] STATISTICAL-MECHANICS OF RANDOM COIL NETWORKS
    GRAESSLEY, WW
    MACROMOLECULES, 1975, 8 (02) : 186 - 190
  • [43] Statistical mechanics of the fashion game on random networks
    Sun, YiFan
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2016,
  • [44] Statistical mechanics of EKF learning in neural networks
    Schottky, B
    Saad, D
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1999, 32 (09): : 1605 - 1621
  • [45] A statistical mechanics approach to autopoietic immune networks
    Barra, Adriano
    Agliari, Elena
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2010,
  • [46] Principles of statistical mechanics of uncorrelated random networks
    Dorogovtsev, SN
    Mendes, JFF
    Samukhin, A
    NUCLEAR PHYSICS B, 2003, 666 (03) : 396 - 416
  • [47] ON THE STATISTICAL MECHANICS OF PROBABILISTIC MODELS OF NEURAL NETWORKS
    钱敏平
    龚光鲁
    谢松茂
    Acta Mathematicae Applicatae Sinica, 1995, (03) : 292 - 299
  • [48] Statistical mechanics of macromolecular networks without replicas
    Solf, MP
    Vilgis, TA
    JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL, 1995, 28 (23): : 6655 - 6668
  • [49] Statistical mechanics of reputation systems in autonomous networks
    Manoel, Andre
    Vicente, Renato
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2013,
  • [50] Statistical mechanics of neural networks: Theory and applications
    DAutilia, R
    Guerra, F
    APPLICATIONS AND SCIENCE OF ARTIFICIAL NEURAL NETWORKS II, 1996, 2760 : 726 - 737