Statistical mechanics of interacting metabolic networks

被引:7
|
作者
Fernandez-de-Cossio-Diaz, Jorge [1 ,2 ]
Mulet, Roberto [2 ,3 ]
机构
[1] Ctr Mol Immunol, Syst Biol Dept, Calle 216 Esq 15,POB 16040, Havana 11600, Cuba
[2] Univ Havana, Phys Fac, Dept Theoret Phys, Grp Complex Syst & Stat Phys, Havana 10400, Cuba
[3] IIGM, Turin, Italy
基金
欧盟地平线“2020”;
关键词
LACTATE METABOLISM; EVOLUTION; BRAIN; COOPERATION; COMPETITION; MODEL; FLUX;
D O I
10.1103/PhysRevE.101.042401
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We cast the metabolism of interacting cells within a statistical mechanics framework considering both the actual phenotypic capacities of each cell and its interaction with its neighbors. Reaction fluxes will be the components of high-dimensional spin vectors, whose values will be constrained by the stochiometry and the energy requirements of the metabolism. Within this picture, finding the phenotypic states of the population turns out to be equivalent to searching for the equilibrium states of a disordered spin model. We provide a general solution of this problem for arbitrary metabolic networks and interactions. We apply this solution to a simplified model of metabolism and to a complex metabolic network, the central core of Escherichia coli, and demonstrate that the combination of selective pressure and interactions defines a complex phenotypic space. We also present numerical results for cells fixed in a grid. These results reproduce the qualitative picture discussed for the mean-field model. Cells may specialize in producing or consuming metabolites complementing each other, and this is described by an equilibrium phase space with multiple minima, like in a spin-glass model.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] A statistical mechanics description of environmental variability in metabolic networks
    Jonathan J. Crofts
    Ernesto Estrada
    Journal of Mathematical Chemistry, 2014, 52 : 675 - 688
  • [2] A statistical mechanics description of environmental variability in metabolic networks
    Crofts, Jonathan J.
    Estrada, Ernesto
    JOURNAL OF MATHEMATICAL CHEMISTRY, 2014, 52 (02) : 675 - 688
  • [3] STATISTICAL MECHANICS OF INTERACTING DIPOLES
    BARKER, JA
    PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES A-MATHEMATICAL AND PHYSICAL SCIENCES, 1953, 219 (1138): : 367 - 372
  • [4] STATISTICAL MECHANICS OF INTERACTING SYSTEMS
    TRIVEDI, PC
    PROGRESS OF THEORETICAL PHYSICS, 1970, 44 (05): : 1192 - &
  • [5] Statistical mechanics of interacting peapods
    Calbi, MM
    Gatica, SM
    Cole, MW
    PHYSICAL REVIEW B, 2003, 67 (20)
  • [6] Moral foundations in an interacting neural networks society: A statistical mechanics analysis
    Vicente, R.
    Susemihl, A.
    Jerico, J. P.
    Caticha, N.
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2014, 400 : 124 - 138
  • [7] Statistical mechanics for metabolic networks during steady state growth
    Daniele De Martino
    Anna MC Andersson
    Tobias Bergmiller
    Călin C. Guet
    Gašper Tkačik
    Nature Communications, 9
  • [8] Statistical mechanics for metabolic networks during steady state growth
    De Martino, Daniele
    Andersson, Anna M. C.
    Bergmiller, Tobias
    Guet, Calin C.
    Tkacik, Gasper
    NATURE COMMUNICATIONS, 2018, 9
  • [9] REMARKS ON STATISTICAL MECHANICS OF INTERACTING SYSTEMS
    ISIHARA, A
    TAKAHASH.Y
    PROGRESS OF THEORETICAL PHYSICS, 1973, 49 (01): : 146 - 152
  • [10] STATISTICAL MECHANICS OF A SYSTEM OF INTERACTING BOSONS
    SINGH, KK
    PHYSICA, 1967, 34 (02): : 285 - +