Genome-wide association study identifies five new schizophrenia loci

被引:1458
|
作者
Ripke, Stephan [2 ]
Sanders, Alan R. [1 ,3 ]
Kendler, Kenneth S. [4 ,5 ,6 ]
Levinson, Douglas F. [7 ]
Sklar, Pamela [2 ,8 ]
Holmans, Peter A. [9 ,10 ]
Lin, Dan-Yu [11 ]
Duan, Jubao [1 ,3 ]
Ophoff, Roel A. [12 ,13 ,14 ,15 ]
Andreassen, Ole A. [16 ,17 ]
Scolnick, Edward [18 ]
Cichon, Sven [19 ,20 ,21 ]
Clair, David St. [22 ]
Corvin, Aiden [23 ]
Gurling, Hugh [24 ]
Werge, Thomas [25 ]
Rujescu, Dan [26 ]
Blackwood, Douglas H. R. [27 ]
Pato, Carlos N. [28 ]
Malhotra, Anil K. [29 ,30 ,31 ]
Purcell, Shaun [18 ]
Dudbridge, Frank [32 ]
Neale, Benjamin M. [18 ]
Rossin, Lizzy [2 ]
Visscher, Peter M. [33 ]
Posthuma, Danielle [34 ,35 ]
Ruderfer, Douglas M. [2 ]
Fanous, Ayman [5 ,36 ,37 ]
Stefansson, Hreinn [38 ]
Steinberg, Stacy [38 ]
Mowry, Bryan J. [39 ,40 ]
Golimbet, Vera [41 ]
De Hert, Marc [42 ]
Jonsson, Erik G. [43 ]
Bitter, Istvan [44 ]
Pietilainen, Olli P. H. [45 ,46 ]
Collier, David A. [47 ]
Tosato, Sarah [48 ]
Agartz, Ingrid [16 ,49 ]
Albus, Margot [50 ]
Alexander, Madeline [7 ]
Amdur, Richard L. [36 ,37 ]
Amin, Farooq [51 ,52 ]
Bass, Nicholas [24 ]
Bergen, Sarah E. [2 ]
Black, Donald W. [53 ]
Borglum, Anders D. [54 ,55 ]
Brown, Matthew A. [56 ]
Bruggeman, Richard [57 ]
Buccola, Nancy G. [58 ]
机构
[1] NorthShore Univ HealthSyst, Dept Psychiat & Behav Sci, Evanston, IL USA
[2] Massachusetts Gen Hosp, Ctr Human Genet Res, Boston, MA 02114 USA
[3] Univ Chicago, Dept Psychiat & Behav Sci, Chicago, IL 60637 USA
[4] Virginia Commonwealth Univ, Sch Med, Virginia Inst Psychiat & Behav Genet, Richmond, VA USA
[5] Virginia Commonwealth Univ, Sch Med, Dept Psychiat, Richmond, VA USA
[6] Virginia Commonwealth Univ, Sch Med, Dept Human & Mol Genet, Richmond, VA USA
[7] Stanford Univ, Dept Psychiat & Behav Sci, Stanford, CA 94305 USA
[8] Mt Sinai Sch Med, Dept Psychiat, New York, NY USA
[9] Cardiff Univ, MRC, Ctr Neuropsychiat Genet & Gen, Sch Med, Cardiff, S Glam, Wales
[10] Cardiff Univ, Dept Psychol Med & Neurol, Sch Med, Cardiff, S Glam, Wales
[11] Univ N Carolina, Dept Biostat, Chapel Hill, NC USA
[12] Univ Med Ctr Utrecht, Dept Med Genet, Utrecht, Netherlands
[13] Univ Med Ctr Utrecht, Rudolf Magnus Inst Neurosci, Utrecht, Netherlands
[14] Univ Calif Los Angeles, Ctr Neurobehav Genet, Los Angeles, CA USA
[15] Univ Calif Los Angeles, Dept Human Genet, Los Angeles, CA USA
[16] Univ Oslo, Inst Clin Med, Psychiat Sect, Oslo, Norway
[17] Oslo Univ Hosp, Dept Psychiat, Oslo, Norway
[18] Broad Inst, Cambridge, MA USA
[19] Univ Bonn, Dept Genom, Life & Brain Ctr, D-5300 Bonn, Germany
[20] Res Ctr Juelich, Inst Neurosci & Med INM 1, Julich, Germany
[21] Univ Bonn, Inst Human Genet, D-5300 Bonn, Germany
[22] Univ Aberdeen, Inst Med Sci, Aberdeen, Scotland
[23] Trinity Coll Dublin, Neuropsychiat Genet Res Grp, Dublin, Ireland
[24] UCL, Sch Med, Windeyer Inst Med Sci, Mol Psychiat Lab,Res Dept Mental Hlth Sci, London W1N 8AA, England
[25] Copenhagen Univ Hosp, Inst Biol Psychiat, Mental Hlth Ctr MHC Sct Hans, Roskilde, Denmark
[26] Univ Munich, Dept Psychiat, D-8000 Munich, Germany
[27] Univ Edinburgh, Royal Edinburgh Hosp, Div Psychiat, Edinburgh, Midlothian, Scotland
[28] Univ So Calif, Keck Sch Med, Los Angeles, CA 90033 USA
[29] Zucker Hillside Hosp, Div N Shore Long Isl Jewish Hlth Syst, Div Res, Dept Psychiat, Glen Oaks, NY USA
[30] Feinstein Inst Med Res, Ctr Psychiat Neurosci, Manhasset, NY USA
[31] Yeshiva Univ, Albert Einstein Coll Med, Dept Psychiat & Behav Sci, New York, NY 10033 USA
[32] London Sch Hyg & Trop Med, Dept Non Communicable Dis Epidemiol, London WC1, England
[33] Queensland Inst Med Res, Queensland Stat Genet Lab, Brisbane, Qld 4006, Australia
[34] Vrije Univ Amsterdam, CNCR, Dept Funct Gen, Amsterdam, Netherlands
[35] Vrije Univ Amsterdam Med Ctr, Dept Med Genom, Amsterdam, Netherlands
[36] Vet Affairs Med Ctr, Washington, DC 20422 USA
[37] Georgetown Univ, Sch Med, Dept Psychiat, Washington, DC USA
[38] deCODE Genet, Reykjavik, Iceland
[39] Univ Queensland, Queensland Brain Inst, Brisbane, Qld, Australia
[40] Univ Queensland, Queensland Ctr Mental Hlth Res, Brisbane, Qld, Australia
[41] Russian Acad Med Sci, Mental Hlth Res Ctr, Moscow 109801, Russia
[42] Katholieke Univ Leuven, Univ Psychiat Ctr, Kortenberg, Belgium
[43] Karolinska Hosp & Inst, Human Brain Informat HUBIN Project, Dept Clin Neurosci, Stockholm, Sweden
[44] Semmelweis Univ, Dept Psychiat & Psychotherapy, Budapest, Hungary
[45] Univ Helsinki, FIMM, Helsinki, Finland
[46] Univ Helsinki, Dept Med Genet, Helsinki, Finland
[47] Kings Coll London, Social Genet & Dev Psychiat Ctr, London WC2R 2LS, England
[48] Univ Verona, Sect Psychiat & Clin Psychol, I-37100 Verona, Italy
[49] Diakonhjemmet Hosp, Dept Res, Oslo, Norway
[50] State Mental Hosp, Haar, Germany
基金
美国国家卫生研究院;
关键词
COMMON SNPS EXPLAIN; BIPOLAR DISORDER; HUMAN HEIGHT; LARGE PROPORTION; MICRORNA; VARIANTS; SUSCEPTIBILITY; HERITABILITY; INDIVIDUALS; ANCESTRY;
D O I
10.1038/ng.940
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
We examined the role of common genetic variation in schizophrenia in a genome-wide association study of substantial size: a stage 1 discovery sample of 21,856 individuals of European ancestry and a stage 2 replication sample of 29,839 independent subjects. The combined stage 1 and 2 analysis yielded genome-wide significant associations with schizophrenia for seven loci, five of which are new (1p21.3, 2q32.3, 8p23.2, 8q21.3 and 10q24.32-q24.33) and two of which have been previously implicated (6p21.32-p22.1 and 18q21.2). The strongest new finding (P = 1.6 x 10(-11)) was with rs1625579 within an intron of a putative primary transcript for MIR137 (microRNA 137), a known regulator of neuronal development. Four other schizophrenia loci achieving genome-wide significance contain predicted targets of MIR137, suggesting MIR137-mediated dysregulation as a previously unknown etiologic mechanism in schizophrenia. In a joint analysis with a bipolar disorder sample (16,374 affected individuals and 14,044 controls), three loci reached genome-wide significance: CACNA1C (rs4765905, P = 7.0 x 10(-9)), ANK3 (rs10994359, P = 2.5 x 10(-8)) and the ITIH3-ITIH4 region (rs2239547, P = 7.8 x 10(-9)).
引用
收藏
页码:969 / 976
页数:8
相关论文
共 50 条
  • [2] Genome-wide association study identifies five new schizophrenia loci
    Meera Swami
    Nature Medicine, 2011, 17 (10) : 1199 - 1199
  • [3] Genome-wide association study identifies five new breast cancer susceptibility loci
    Clare Turnbull
    Shahana Ahmed
    Jonathan Morrison
    David Pernet
    Anthony Renwick
    Mel Maranian
    Sheila Seal
    Maya Ghoussaini
    Sarah Hines
    Catherine S Healey
    Deborah Hughes
    Margaret Warren-Perry
    William Tapper
    Diana Eccles
    D Gareth Evans
    Maartje Hooning
    Mieke Schutte
    Ans van den Ouweland
    Richard Houlston
    Gillian Ross
    Cordelia Langford
    Paul D P Pharoah
    Michael R Stratton
    Alison M Dunning
    Nazneen Rahman
    Douglas F Easton
    Nature Genetics, 2010, 42 : 504 - 507
  • [4] Genome-wide association study identifies five susceptibility loci for glioma
    Sanjay Shete
    Fay J Hosking
    Lindsay B Robertson
    Sara E Dobbins
    Marc Sanson
    Beatrice Malmer
    Matthias Simon
    Yannick Marie
    Blandine Boisselier
    Jean-Yves Delattre
    Khe Hoang-Xuan
    Soufiane El Hallani
    Ahmed Idbaih
    Diana Zelenika
    Ulrika Andersson
    Roger Henriksson
    A Tommy Bergenheim
    Maria Feychting
    Stefan Lönn
    Anders Ahlbom
    Johannes Schramm
    Michael Linnebank
    Kari Hemminki
    Rajiv Kumar
    Sarah J Hepworth
    Amy Price
    Georgina Armstrong
    Yanhong Liu
    Xiangjun Gu
    Robert Yu
    Ching Lau
    Minouk Schoemaker
    Kenneth Muir
    Anthony Swerdlow
    Mark Lathrop
    Melissa Bondy
    Richard S Houlston
    Nature Genetics, 2009, 41 : 899 - 904
  • [5] Genome-Wide Association Study Identifies Five New Loci Associated With Lung Function
    Repapi, E.
    Sayers, I.
    Wain, L. V.
    Obeidat, M.
    Elliott, P.
    Strachan, D. P.
    Hall, I. P.
    Tobin, M. D.
    Consortium, SpiroMeta
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2010, 181
  • [6] Genome-wide association study identifies five susceptibility loci for glioma
    Shete, Sanjay
    Hosking, Fay J.
    Robertson, Lindsay B.
    Dobbins, Sara E.
    Sanson, Marc
    Malmer, Beatrice
    Simon, Matthias
    Marie, Yannick
    Boisselier, Blandine
    Delattre, Jean-Yves
    Hoang-Xuan, Khe
    El Hallani, Soufiane
    Idbaih, Ahmed
    Zelenika, Diana
    Andersson, Ulrika
    Henriksson, Roger
    Bergenheim, A. Tommy
    Feychting, Maria
    Lonn, Stefan
    Ahlbom, Anders
    Schramm, Johannes
    Linnebank, Michael
    Hemminki, Kari
    Kumar, Rajiv
    Hepworth, Sarah J.
    Price, Amy
    Armstrong, Georgina
    Liu, Yanhong
    Gu, Xiangjun
    Yu, Robert
    Lau, Ching
    Schoemaker, Minouk
    Muir, Kenneth
    Swerdlow, Anthony
    Lathrop, Mark
    Bondy, Melissa
    Houlston, Richard S.
    NATURE GENETICS, 2009, 41 (08) : 899 - U54
  • [7] Genome-wide association study identifies five new cadmium uptake loci in wheat
    Bin Safdar, Luqman
    Almas, Fakhrah
    Sarfraz, Sidra
    Ejaz, Muhammad
    Ali, Zeshan
    Mahmood, Zahid
    Yang, Li
    Tehseen, Muhammad Massub
    Ikram, Muhammad
    Liu, Shengyi
    Quraishi, Umar Masood
    PLANT GENOME, 2020, 13 (02):
  • [8] Genome-wide association study identifies five new breast cancer susceptibility loci
    Turnbull, Clare
    Ahmed, Shahana
    Morrison, Jonathan
    Pernet, David
    Renwick, Anthony
    Maranian, Mel
    Seal, Sheila
    Ghoussaini, Maya
    Hines, Sarah
    Healey, Catherine S.
    Hughes, Deborah
    Warren-Perry, Margaret
    Tapper, William
    Eccles, Diana
    Evans, D. Gareth
    Hooning, Maartje
    Schutte, Mieke
    van den Ouweland, Ans
    Houlston, Richard
    Ross, Gillian
    Langford, Cordelia
    Pharoah, Paul D. P.
    Stratton, Michael R.
    Dunning, Alison M.
    Rahman, Nazneen
    Easton, Douglas F.
    NATURE GENETICS, 2010, 42 (06) : 504 - U47
  • [9] Genome-wide association analysis identifies 13 new risk loci for schizophrenia
    Ripke, Stephan
    O'Dushlaine, Colm
    Chambert, Kimberly
    Moran, Jennifer L.
    Kaehler, Anna K.
    Akterin, Susanne
    Bergen, Sarah E.
    Collins, Ann L.
    Crowley, James J.
    Fromer, Menachem
    Kim, Yunjung
    Lee, Sang Hong
    Magnusson, Patrik K. E.
    Sanchez, Nick
    Stahl, Eli A.
    Williams, Stephanie
    Wray, Naomi R.
    Xia, Kai
    Bettella, Francesco
    Borglum, Anders D.
    Bulik-Sullivan, Brendan K.
    Cormican, Paul
    Craddock, Nick
    de Leeuw, Christiaan
    Durmishi, Naser
    Gill, Michael
    Golimbet, Vera
    Hamshere, Marian L.
    Holmans, Peter
    Hougaard, David M.
    Kendler, Kenneth S.
    Lin, Kuang
    Morris, Derek W.
    Mors, Ole
    Mortensen, Preben B.
    Neale, Benjamin M.
    O'Neill, Francis A.
    Owen, Michael J.
    Milovancevic, Milica Pejovic
    Posthuma, Danielle
    Powell, John
    Richards, Alexander L.
    Riley, Brien P.
    Ruderfer, Douglas
    Rujescu, Dan
    Sigurdsson, Engilbert
    Silagadze, Teimuraz
    Smit, August B.
    Stefansson, Hreinn
    Steinberg, Stacy
    NATURE GENETICS, 2013, 45 (10) : 1150 - +
  • [10] Genome-wide association analysis identifies 30 new susceptibility loci for schizophrenia
    Li, Zhiqiang
    Chen, Jianhua
    Yu, Hao
    He, Lin
    Xu, Yifeng
    Zhang, Dai
    Yi, Qizhong
    Li, Changgui
    Li, Xingwang
    Shen, Jiawei
    Song, Zhijian
    Ji, Weidong
    Wang, Meng
    Zhou, Juan
    Chen, Boyu
    Liu, Yahui
    Wang, Jiqiang
    Wang, Peng
    Yang, Ping
    Wang, Qingzhong
    Feng, Guoyin
    Liu, Benxiu
    Sun, Wensheng
    Li, Baojie
    He, Guang
    Li, Weidong
    Wan, Chunling
    Xu, Qi
    Li, Wenjin
    Wen, Zujia
    Liu, Ke
    Huang, Fang
    Ji, Jue
    Ripke, Stephan
    Yue, Weihua
    Sullivan, Patrick F.
    O'Donovan, Michael C.
    Shi, Yongyong
    NATURE GENETICS, 2017, 49 (11) : 1576 - +