Tools and resources for identifying protein families, domains and motifs

被引：0
|
作者：
Mulder, Nicola J. [1 ]
Apweiler, Rolf [1 ]
机构：
[1] EMBL Outstn, European Bioinformat Inst, Cambridge CB10 1SD, England
来源：
GENOME BIOLOGY | 2002年 / 3卷 / 01期
关键词：
D O I：
暂无
中图分类号：
Q81 [生物工程学（生物技术）]; Q93 [微生物学];
学科分类号：
071005 ; 0836 ; 090102 ; 100705 ;
摘要：
With the large influx of raw sequence data from genome sequencing projects, there is a need for reliable automatic methods for protein sequence analysis and classification. The most useful tools use various methods for identifying motifs or domains found in previously characterized protein families. This article reviews the tools and resources available on the web for identifying signatures within proteins and discusses how they may be used in the analysis of new or unknown protein sequences.
引用
收藏
页数：8
相关论文
共 50 条
  • [21] Graph Spectral Approach for Identifying Protein Domains
    Yalamanchili, Hari Krishna
    Parekh, Nita
    [J]. BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, PROCEEDINGS, 2009, 5462 : 437 - 448
  • [22] An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom
    Vujaklija, Ivan
    Bielen, Ana
    Paradzik, Tina
    Bidin, Sinisa
    Goldstein, Pavle
    Vujaklija, Dusica
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [23] An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom
    Ivan Vujaklija
    Ana Bielen
    Tina Paradžik
    Siniša Biđin
    Pavle Goldstein
    Dušica Vujaklija
    [J]. BMC Bioinformatics, 17
  • [24] Genomic analysis of membrane protein families: abundance and conserved motifs
    Liu, Yang
    Engelman, Donald M.
    Gerstein, Mark
    [J]. GENOME BIOLOGY, 2002, 3 (10):
  • [25] A DATABASE OF PROTEIN-STRUCTURE FAMILIES WITH COMMON FOLDING MOTIFS
    HOLM, L
    OUZOUNIS, C
    SANDER, C
    TUPAREV, G
    VRIEND, G
    [J]. PROTEIN SCIENCE, 1992, 1 (12) : 1691 - 1698
  • [26] Genomic analysis of membrane protein families: abundance and conserved motifs
    Yang Liu
    Donald M Engelman
    Mark Gerstein
    [J]. Genome Biology, 3 (10)
  • [27] The InterPro protein families and domains database: 20 years on
    Blum, Matthias
    Chang, Hsin-Yu
    Chuguransky, Sara
    Grego, Tiago
    Kandasaamy, Swaathi
    Mitchell, Alex
    Nuka, Gift
    Paysan-Lafosse, Typhaine
    Qureshi, Matloob
    Raj, Shriya
    Richardson, Lorna
    Salazar, Gustavo A.
    Williams, Lowri
    Bork, Peer
    Bridge, Alan
    Gough, Julian
    Haft, Daniel H.
    Letunic, Ivica
    Marchler-Bauer, Aron
    Mi, Huaiyu
    Natale, Darren A.
    Necci, Marco
    Orengo, Christine A.
    Pandurangan, Arun P.
    Rivoire, Catherine
    Sigrist, Christian J. A.
    Sillitoe, Ian
    Thanki, Narmada
    Thomas, Paul D.
    Tosatto, Silvio C. E.
    Wu, Cathy H.
    Bateman, Alex
    Finn, Robert D.
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D344 - D354
  • [28] EvoProDom: evolutionary modeling of protein families by assessing translocations of protein domains
    Carmi, Gon
    Gorohovski, Alessandro
    Frenkel-Morgenstern, Milana
    [J]. FEBS OPEN BIO, 2021, 11 (09): : 2507 - 2524
  • [29] Identifying Disease Associated miRNAs Based on Protein Domains
    Qin, Gui-Min
    Li, Rui-Yi
    Zhao, Xing-Ming
    [J]. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2016, 13 (06) : 1027 - 1035
  • [30] Making connections with vulnerable children and families: Creative tools and resources for practice
    Murphy, Ciaran
    Baker, Julie
    Forrest, Sarah
    [J]. CHILD ABUSE REVIEW, 2024, 33 (03)
12345