Stochastic synchronization of genetic oscillator networks

被引:70
|
作者
Li, Chunguang [1 ]
Chen, Luonan
Aihara, Kazuyuki
机构
[1] Univ Elect Sci & Technol China, Ctr Nonlinear & Complex Syst, Sch Elect Engn, Chengdu 610054, Peoples R China
[2] Univ Tokyo, ERATO, Komaba Open Lab, Aihara Complex Modelling Project,Meguro Ku, Tokyo 1538505, Japan
[3] Univ Tokyo, Inst Ind Sci, Tokyo 1538505, Japan
[4] Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China
[5] Osaka Sanyo Univ, Dept Elect & Elect Engn, Osaka, Japan
关键词
D O I
10.1186/1752-0509-1-6
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore, it is important to study the effects of noise perturbation on the synchronous dynamics of genetic oscillators. From the synthetic biology viewpoint, it is also important to implement biological systems that minimizing the negative influence of the perturbations. Results: In this paper, based on systems biology approach, we provide a general theoretical result on the synchronization of genetic oscillators with stochastic perturbations. By exploiting the specific properties of many genetic oscillator models, we provide an easy-verified sufficient condition for the stochastic synchronization of coupled genetic oscillators, based on the Lur'e system approach in control theory. A design principle for minimizing the influence of noise is also presented. To demonstrate the effectiveness of our theoretical results, a population of coupled repressillators is adopted as a numerical example. Conclusion: In summary, we present an efficient theoretical method for analyzing the synchronization of genetic oscillator networks, which is helpful for understanding and testing the synchronization phenomena in biological organisms. Besides, the results are actually applicable to general oscillator networks.
引用
收藏
页数:11
相关论文
共 50 条
  • [41] Synchronization control of oscillator networks using symbolic regression
    Gout, Julien
    Quade, Markus
    Shafi, Kamran
    Niven, Robert K.
    Abel, Markus
    NONLINEAR DYNAMICS, 2018, 91 (02) : 1001 - 1021
  • [42] Optimization of noise-induced synchronization of oscillator networks
    Kawamura, Yoji
    Nakao, Hiroya
    PHYSICAL REVIEW E, 2016, 94 (03)
  • [43] Synchronization in oscillator networks with delayed coupling: A stability criterion
    Earl, MG
    Strogatz, SH
    PHYSICAL REVIEW E, 2003, 67 (03):
  • [44] Authentication process based on the synchronization of chaotic oscillator networks
    Laval, L.
    CSNDSP 08: PROCEEDINGS OF THE SIXTH INTERNATIONAL SYMPOSIUM ON COMMUNICATION SYSTEMS, NETWORKS AND DIGITAL SIGNAL PROCESSING, 2008, : 11 - 15
  • [45] Synchronization control of oscillator networks using symbolic regression
    Julien Gout
    Markus Quade
    Kamran Shafi
    Robert K. Niven
    Markus Abel
    Nonlinear Dynamics, 2018, 91 : 1001 - 1021
  • [46] Synchronization in Moving Pulse-Coupled Oscillator Networks
    Wang, Jingyi
    Xu, Chen
    Feng, Jianwen
    Chen, Michael Z. Q.
    Wang, Xiaofan
    Zhao, Yi
    IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 2015, 62 (10) : 2544 - 2554
  • [47] Establishing generalized synchronization in Rössler oscillator networks
    Koronovskii A.A.
    Moskalenko O.I.
    Pivovarov A.A.
    Hramov A.E.
    Bulletin of the Russian Academy of Sciences: Physics, 2016, 80 (2) : 186 - 189
  • [48] Semicontraction and Synchronization of Kuramoto-Sakaguchi Oscillator Networks
    Delabays, Robin
    Bullo, Francesco
    IEEE CONTROL SYSTEMS LETTERS, 2023, 7 : 1566 - 1571
  • [49] Synchronization and frustration in oscillator networks with attractive and repulsive interactions
    Zanette, DH
    EUROPHYSICS LETTERS, 2005, 72 (02): : 190 - 196
  • [50] Limits on Anti-Phase Synchronization in Oscillator Networks
    George Vathakkattil Joseph
    Vikram Pakrashi
    Scientific Reports, 10