Stochastic synchronization of genetic oscillator networks

被引:70
|
作者
Li, Chunguang [1 ]
Chen, Luonan
Aihara, Kazuyuki
机构
[1] Univ Elect Sci & Technol China, Ctr Nonlinear & Complex Syst, Sch Elect Engn, Chengdu 610054, Peoples R China
[2] Univ Tokyo, ERATO, Komaba Open Lab, Aihara Complex Modelling Project,Meguro Ku, Tokyo 1538505, Japan
[3] Univ Tokyo, Inst Ind Sci, Tokyo 1538505, Japan
[4] Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China
[5] Osaka Sanyo Univ, Dept Elect & Elect Engn, Osaka, Japan
关键词
D O I
10.1186/1752-0509-1-6
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: The study of synchronization among genetic oscillators is essential for the understanding of the rhythmic phenomena of living organisms at both molecular and cellular levels. Genetic networks are intrinsically noisy due to natural random intra- and inter-cellular fluctuations. Therefore, it is important to study the effects of noise perturbation on the synchronous dynamics of genetic oscillators. From the synthetic biology viewpoint, it is also important to implement biological systems that minimizing the negative influence of the perturbations. Results: In this paper, based on systems biology approach, we provide a general theoretical result on the synchronization of genetic oscillators with stochastic perturbations. By exploiting the specific properties of many genetic oscillator models, we provide an easy-verified sufficient condition for the stochastic synchronization of coupled genetic oscillators, based on the Lur'e system approach in control theory. A design principle for minimizing the influence of noise is also presented. To demonstrate the effectiveness of our theoretical results, a population of coupled repressillators is adopted as a numerical example. Conclusion: In summary, we present an efficient theoretical method for analyzing the synchronization of genetic oscillator networks, which is helpful for understanding and testing the synchronization phenomena in biological organisms. Besides, the results are actually applicable to general oscillator networks.
引用
收藏
页数:11
相关论文
共 50 条
  • [1] Synchronization of stochastic genetic oscillator networks with time delays and Markovian jumping parameters
    Wang, Yao
    Wang, Zidong
    Liang, Jinling
    Li, Yurong
    Du, Min
    NEUROCOMPUTING, 2010, 73 (13-15) : 2532 - 2539
  • [2] Synchronization Analysis for a Class of Genetic Oscillator Networks
    Gao Q.
    Du J.
    Liu X.
    Journal of Mathematical Sciences, 2019, 238 (3) : 236 - 247
  • [3] Global Stochastic Synchronization of Kuramoto-Oscillator Networks With Distributed Control
    Wu, Jie
    Li, Xiang
    IEEE TRANSACTIONS ON CYBERNETICS, 2021, 51 (12) : 5825 - 5835
  • [4] Stochastic Finite-Time Synchronization of Kuramoto-Oscillator Networks
    Liu, Mingqi
    Wu, Jie
    2022 34TH CHINESE CONTROL AND DECISION CONFERENCE, CCDC, 2022, : 3756 - 3762
  • [5] Finite time synchronization of stochastic Markovian jumping genetic oscillator networks with time-varying delay and Levy noise
    Ma, Shuo
    Kang, Yanmei
    ADVANCES IN DIFFERENCE EQUATIONS, 2019, 2019 (01)
  • [6] Stochastic model and synchronization analysis for large-scale oscillator networks and their applications
    Chen, X.
    Zhai, G.
    PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART I-JOURNAL OF SYSTEMS AND CONTROL ENGINEERING, 2008, 222 (I7) : 711 - 720
  • [7] Finite-time stochastic synchronization of genetic regulatory networks
    Jiang, Nan
    Liu, Xiaoyang
    Yu, Wenwu
    Shen, Jun
    NEUROCOMPUTING, 2015, 167 : 314 - 321
  • [8] Oscillator Networks: Delays and Synchronization
    Danciu, Daniela
    Rasvan, Vladimir
    IFAC PAPERSONLINE, 2021, 54 (09): : 32 - 37
  • [9] Boundaries of synchronization in oscillator networks
    Medeiros, Everton S.
    Medrano-T, Rene O.
    Caldas, Ibere L.
    Feudel, Ulrike
    PHYSICAL REVIEW E, 2018, 98 (03)
  • [10] Clustering and the synchronization of oscillator networks
    McGraw, PN
    Menzinger, M
    PHYSICAL REVIEW E, 2005, 72 (01):