Evaluation of mass spectral library search algorithms implemented in commercial software

被引：39
|
作者：
Samokhin, Andrey [1 ]
Sotnezova, Ksenia [1 ]
Lashin, Vitaly [2 ]
Revelsky, Igor [1 ]
机构：
[1] Moscow MV Lomonosov State Univ, Fac Chem, Moscow 119991, Russia
[2] Adv Chem Dev ACD Labs, Moscow 117513, Russia
来源：
JOURNAL OF MASS SPECTROMETRY | 2015年 / 50卷 / 06期
关键词：
mass spectral library; mass spectral database; library search; identification; MS SEARCH; CHEM STATION; PBM; ACD/SPECDB; GC/MS SOLUTION; COMPOUND IDENTIFICATION; MATCHING SYSTEM; SPECTROMETRY; OPTIMIZATION; CAPABILITIES; WAVELET;
D O I：
10.1002/jms.3591
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Performance of several library search algorithms (against EI mass spectral databases) implemented in commercial software products (ACD/SPECDB, CHEMSTATION, GC/MS SOLUTION and MS SEARCH) was estimated. Test set contained 1000 mass spectra, which were randomly selected from NIST'08 (RepLib) mass spectral database. It was shown that composite (also known as identity) algorithm implemented in MS SEARCH (NIST) software gives statistically the best results: the correct compound occupied the first position in the list of possible candidates in 81% of cases; the correct compound was within the list of top ten candidates in 98% of cases. It was found that use of presearch option can lead to rejection of the correct answer from the list of possible candidates (therefore presearch option should not be used, if possible). Overall performance of library search algorithms was estimated using receiver operating characteristic curves. Copyright (C) 2015 John Wiley & Sons, Ltd.
引用
收藏
页码：820 / 825
页数：6
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