Computational identification and analysis of single-nucleotide polymorphisms and insertions/deletions in expressed sequence tag data of Eucalyptus

被引：0
|
作者：
Singh, Tiratha Raj [2 ]
Gupta, Arun [3 ,4 ]
Riju, Aykkal [1 ]
Mahalaxmi, M. [5 ]
Seal, Abhik [6 ]
Arunachalam, V. [1 ,7 ]
机构：
[1] Indian Council Agr Res, Cent Plantat Crops Res Inst, Mol Biol & Bioinformat Lab, Kasaragod 671124, India
[2] JUIT, Dept Biotechnol & Bioinformat, Teh Kandaghat 173234, Solan, India
[3] Devi Ahilya Vishwavidyalaya DAVV, Sch Comp Sci & Informat Technol, Indore 452013, Madhya Pradesh, India
[4] Abhyudaya Technol, Computat Biol Grp, Indore 452003, Madhya Pradesh, India
[5] Kuvempu Univ, Dept Biotechnol & Bioinformat, Jnaneshwari 577451, Shankaraghatta, India
[6] DOEACC Soc, Kolkata 700032, India
[7] ICAR Res Complex Goa, Ela 403402, Old Goa, India
来源：
JOURNAL OF GENETICS | 2011年 / 90卷 / 02期
关键词：
ESTs; indels; SNPs; nucleotide diversity; Shannon index; molecular markers; Eucalyptus; LINKAGE DISEQUILIBRIUM; CANDIDATE GENES; DIVERSITY; L;
D O I：
暂无
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
引用
收藏
页码：E34 / E38
页数：5
相关论文
共 50 条
  • [11] Mining of haplotype-based expressed sequence tag single nucleotide polymorphisms in citrus
    Chen, Chunxian
    Gmitter, Fred G., Jr.
    BMC GENOMICS, 2013, 14
  • [12] Identification and analysis of single-nucleotide polymorphisms in the gemcitabine pharmacologic pathway
    Fukunaga, AK
    Marsh, S
    Murry, DJ
    Hurley, TD
    McLeod, HL
    PHARMACOGENOMICS JOURNAL, 2004, 4 (05): : 307 - 314
  • [13] Identification and analysis of single-nucleotide polymorphisms in the gemcitabine pharmacologic pathway
    A K Fukunaga
    S Marsh
    D J Murry
    T D Hurley
    H L McLeod
    The Pharmacogenomics Journal, 2004, 4 : 307 - 314
  • [14] Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences
    Kris Irizarry
    Vlad Kustanovich
    Cheng Li
    Nik Brown
    Stanley Nelson
    Wing Wong
    Christopher J. Lee
    Nature Genetics, 2000, 26 : 233 - 236
  • [15] Genome-wide analysis of single-nucleotide polymorphisms in human expressed sequences
    Irizarry, K
    Kustanovich, V
    Li, C
    Brown, N
    Nelson, S
    Wong, W
    Lee, CJ
    NATURE GENETICS, 2000, 26 (02) : 233 - 236
  • [16] Large-scale detection and application of expressed sequence tag single nucleotide polymorphisms in Nicotiana
    Wang, Y.
    Zhou, D.
    Wang, S.
    Yang, L.
    GENETICS AND MOLECULAR RESEARCH, 2015, 14 (03): : 7793 - 7800
  • [17] Single-nucleotide polymorphisms detected in expressed sequence tags of melon (Cucumis melo L.)
    Morales, M
    Roig, E
    Monforte, AJ
    Arús, P
    Garcia-Mas, J
    GENOME, 2004, 47 (02) : 352 - 360
  • [18] More single-nucleotide mutations surround small insertions than small deletions in primates
    Huang, Shengfeng
    Yu, Ting
    Chen, Zelin
    Yuan, Shaochun
    Chen, Shangwu
    Xu, Anlong
    HUMAN MUTATION, 2012, 33 (07) : 1099 - 1106
  • [19] Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms
    Kudva, IT
    Evans, PS
    Perna, NT
    Barrett, TJ
    Ausubel, FM
    Blattner, FR
    Calderwood, SB
    JOURNAL OF BACTERIOLOGY, 2002, 184 (07) : 1873 - 1879
  • [20] Defining haplotype blocks and tag single-nucleotide polymorphisms in the human genome
    Schulze, TG
    Zhang, K
    Chen, YS
    Akula, N
    Sun, FZ
    McMahon, FJ
    HUMAN MOLECULAR GENETICS, 2004, 13 (03) : 335 - 342
12345