Genome-Wide Analysis of the HSP20 Gene Family and Expression Patterns of HSP20 Genes in Response to Abiotic Stresses in Cynodon transvaalensis

被引:13
|
作者
Cui, Fengchao [1 ]
Taier, Geli [1 ]
Wang, Xiangfeng [2 ]
Wang, Kehua [1 ]
机构
[1] China Agr Univ, Coll Grassland Sci & Technol, Dept Turfgrass Sci & Engn, Beijing, Peoples R China
[2] China Agr Univ, Coll Agron & Biotechnol, Natl Maize Improvement Ctr, Beijing, Peoples R China
基金
中国国家自然科学基金;
关键词
C; transvaalensis; HSP20 gene family; gene duplication; CtHSP20s; heat stress; HEAT-SHOCK PROTEINS; ACTING REGULATORY ELEMENTS; ARABIDOPSIS-THALIANA; IDENTIFICATION; EVOLUTION; ORGANIZATION; CHAPERONES; MATRIX; DOMAIN;
D O I
10.3389/fgene.2021.732812
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
African bermudagrass (Cynodon transvaalensis Burtt-Davy) is an important warm-season turfgrass and forage grass species. Heat shock protein 20 (HSP20) is a diverse, ancient, and important protein family. To date, HSP20 genes have not been characterized genome-widely in African bermudagrass. Here, we confirmed 41 HSP20 genes in African bermudagrass genome. On the basis of the phylogenetic tree and cellular locations, the HSP20 proteins were classified into 12 subfamilies. Motif composition was consistent with the phylogeny. Moreover, we identified 15 pairs of paralogs containing nine pairs of tandem duplicates and six pairs of WGD/segmental duplicates of HSP20 genes. Unsurprisingly, the syntenic genes revealed that African bermudagrass had a closer evolutionary relationship with monocots (maize and rice) than dicots (Arabidopsis and soybean). The expression patterns of HSP20 genes were identified with the transcriptome data under abiotic stresses. According to the expression profiles, HSP20 genes could be clustered into three groups (Groups I, II, and III). Group I was the largest, and these genes were up-regulated in response to heat stress as expected. In Group II, one monocot-specific HSP20, CtHSP20-14 maintained higher expression levels under optimum temperature and low temperature, but not high temperature. Moreover, a pair of WGD/segmental duplicates CtHSP20-9 and CtHSP20-10 were among the most conserved HSP20s across different plant species, and they seemed to be positively selected in response to extreme temperatures during evolution. A total of 938 cis-elements were captured in the putative promoters of HSP20 genes. Almost half of the cis-elements were stress responsive, indicating that the expression pattern of HSP20 genes under abiotic stresses might be largely regulated by the cis-elements. Additionally, three-dimensional structure simulations and protein-protein interaction networks were incorporated to resolve the function mechanism of HSP20 proteins. In summary, the findings fulfilled the HSP20 family analysis and could provide useful information for further functional investigations of the specific HSP20s (e.g., CtHSP20-9, CtHSP20-10, and CtHSP20-14) in African bermudagrass.
引用
收藏
页数:17
相关论文
共 50 条
  • [31] Comprehensive analysis of Dendrobium catenatum HSP20 family genes and functional characterization of DcHSP20-12 in response to temperature stress
    Wang, Peng
    Zhang, Tingting
    Li, Yuxin
    Zhao, Xi
    Liu, Wen
    Hu, Yanping
    Wang, Jian
    Zhou, Yang
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 258
  • [32] Expression of small stress protein Hsp20 gene in the maturing rat testis
    Yamano, Y
    Ohyama, K
    Ohta, M
    Nakamura, J
    Morishima, I
    JOURNAL OF VETERINARY MEDICAL SCIENCE, 2005, 67 (11): : 1181 - 1184
  • [33] Identification of HSP20 Gene Family in Wheat and Barley and Their Differential Expression Profiling Under Heat Stress
    Pandey, Bharati
    Kaur, Amandeep
    Gupta, Om Prakesh
    Sharma, Indu
    Sharma, Pradeep
    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2015, 175 (05) : 2427 - 2446
  • [34] Identification of HSP20 Gene Family in Wheat and Barley and Their Differential Expression Profiling Under Heat Stress
    Bharati Pandey
    Amandeep Kaur
    Om Prakesh Gupta
    Indu Sharma
    Pradeep Sharma
    Applied Biochemistry and Biotechnology, 2015, 175 : 2427 - 2446
  • [35] Bioinformatic Analysis of Codon Usage Bias of HSP20 Genes in Four Cruciferous Species
    Ji, Huiyue
    Liu, Junnan
    Chen, Yineng
    Yu, Xinyi
    Luo, Chenlu
    Sang, Luxi
    Zhou, Jiayu
    Liao, Hai
    PLANTS-BASEL, 2024, 13 (04):
  • [36] Integrated analysis of HSP20 genes in the developing flesh of peach: identification, expression profiling, and subcellular localization
    Zhang, Chunhua
    Zhang, Yanping
    Su, Ziwen
    Shen, Zhijun
    Song, Hongfeng
    Cai, Zhixiang
    Xu, Jianlan
    Guo, Lei
    Zhang, Yuanyuan
    Guo, Shaolei
    Sun, Meng
    Li, Shenge
    Yu, Mingliang
    BMC PLANT BIOLOGY, 2023, 23 (01)
  • [37] Integrated analysis of HSP20 genes in the developing flesh of peach: identification, expression profiling, and subcellular localization
    Chunhua Zhang
    Yanping Zhang
    Ziwen Su
    Zhijun Shen
    Hongfeng Song
    Zhixiang Cai
    Jianlan Xu
    Lei Guo
    Yuanyuan Zhang
    Shaolei Guo
    Meng Sun
    Shenge Li
    Mingliang Yu
    BMC Plant Biology, 23
  • [38] Genome-Wide Identification of Hsp90 Gene Family in Perennial Ryegrass and Expression Analysis under Various Abiotic Stresses
    Appiah, Charlotte
    Yang, Zhong-Fu
    He, Jie
    Wang, Yang
    Zhou, Jie
    Xu, Wen-Zhi
    Nie, Gang
    Zhu, Yong-Qun
    PLANTS-BASEL, 2021, 10 (11):
  • [39] Identification, expression, and functional analysis of Hsf and Hsp20 gene families in Brachypodium distachyon under heat stress
    Li, Na
    Jiang, Min
    Li, Peng
    Li, Xiwen
    PEERJ, 2021, 9
  • [40] Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
    Zhang, Kaijing
    He, Shuaishuai
    Sui, Yihu
    Gao, Qinghai
    Jia, Shuangshuang
    Lu, Xiaomin
    Jia, Li
    FRONTIERS IN GENETICS, 2021, 12