Genome-Wide Analysis of APETALA2/Ethylene-Responsive Factor (AP2/ERF) Gene Family in Barley (Hordeum vulgare L.)

被引:81
|
作者
Guo, Baojian [1 ]
Wei, Yafeng [2 ]
Xu, Ruibin [3 ]
Lin, Shen [1 ]
Luan, Haiye [1 ]
Lv, Chao [1 ]
Zhang, Xinzhong [1 ]
Song, Xiyun [3 ]
Xu, Rugen [1 ]
机构
[1] Yangzhou Univ, Coinnovat Ctr Modern Prod Technol Grain Crops, Jiangsu Key Lab Crop Genet & Physiol, Key Lab Plant Funct Genom,Minist Educ,Barley Res, Yangzhou, Jiangsu, Peoples R China
[2] JiangSu Yanjiang Inst Agr Sci, Nantong, Peoples R China
[3] Qingdao Agr Univ, Coll Agron & Plant Protect, Qingdao, Peoples R China
来源
PLOS ONE | 2016年 / 11卷 / 09期
基金
中国国家自然科学基金;
关键词
SIGNAL-TRANSDUCTION; SALT STRESS; TRANSCRIPTION FACTORS; EXPRESSION; ARABIDOPSIS; TOLERANCE; DROUGHT; RICE; DEHYDRATION; RESPONSES;
D O I
10.1371/journal.pone.0161322
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
APETALA2/Ethylene-Responsive Factor (AP2/ERF) gene family is plant specific transcription factor. It plays critical roles in development process, tolerance to biotic and abiotic stresses, and responses to plant hormones. However, limited data are available on the contributions of AP2/ERF gene family in barley (Hordeum vulgare L.). In the present study, 121 HvAP2/ERF genes in barley were identified by using bioinformatics methods. A total of 118 HvAP2/ERF (97.5%) genes were located on seven chromosomes. According to phylogenetic classification of AP2/ERF family in Arabidopsis, HvAP2/ERF proteins were divided into AP2 (APETALA2), RAV ( Related to ABI3/VP), DREB (dehydration responsive element binding), ERF (ethylene responsive factors) and soloist sub families. The analysis of duplication events indicated that tandem repeat and segmental duplication contributed to the expansion of the AP2/ERF family in barley. HvDREB1s/2s genes displayed various expression patterns under abiotic stress and phytohormone. Taken together, the data generated in this study will be useful for genome-wide analysis to determine the precise role of the HvAP2/ERF gene during barley development, abiotic stress and phytohormone responses with the ultimate goal of improving crop production.
引用
收藏
页数:17
相关论文
共 50 条
  • [21] Genome-Wide Identification, Evolution and Expressional Analysis of OSCA Gene Family in Barley (Hordeum vulgare L.)
    She, Kuijun
    Pan, Wenqiu
    Yan, Ying
    Shi, Tingrui
    Chu, Yingqi
    Cheng, Yue
    Ma, Bo
    Song, Weining
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (21)
  • [22] Genome-wide analysis of the auxin response factors (ARF) gene family in barley (Hordeum vulgare L.)
    Tombuloglu, Huseyin
    JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY, 2019, 28 (01) : 14 - 24
  • [23] Genome-wide analysis of the auxin response factors (ARF) gene family in barley (Hordeum vulgare L.)
    Huseyin Tombuloglu
    Journal of Plant Biochemistry and Biotechnology, 2019, 28 : 14 - 24
  • [24] Genome-Wide Identification and Analysis of the AP2 Transcription Factor Gene Family in Wheat (Triticum aestivum L.)
    Zhao, Yue
    Ma, Renyi
    Xu, Dongliang
    Bi, Huihui
    Xia, Zongliang
    Peng, Huiru
    FRONTIERS IN PLANT SCIENCE, 2019, 10
  • [25] Genome-Wide Identification and Expression of the AP2/ERF Gene Family in Morus notabilis
    Dou, Hao
    Wang, Tiantian
    Zhou, Xin
    Feng, Xi
    Tang, Wu
    Quan, Jin'e
    Bi, Huitao
    FORESTS, 2024, 15 (04):
  • [26] Genome-wide characterization and evolutionary analysis of the AP2/ERF gene family in lettuce (Lactuca sativa)
    Sunchung Park
    Ainong Shi
    Lyndel W. Meinhardt
    Beiquan Mou
    Scientific Reports, 13
  • [27] Genome-wide characterization and evolutionary analysis of the AP2/ERF gene family in lettuce (Lactuca sativa)
    Park, Sunchung
    Shi, Ainong
    Meinhardt, Lyndel W.
    Mou, Beiquan
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [28] Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera
    Zhuang, Jing
    Peng, Ri-He
    Cheng, Zong-Ming
    Zhang, Jian
    Cai, Bin
    Zhang, Zhen
    Gao, Feng
    Zhu, Bo
    Fu, Xiao-Yan
    Jin, Xiao-Feng
    Chen, Jian-Min
    Qiao, Yu-Shan
    Xiong, Ai-Sheng
    Yao, Quan-Hong
    SCIENTIA HORTICULTURAE, 2009, 123 (01) : 73 - 81
  • [29] Genome-wide analysis of AP2/ERF transcription factors family inBrassica napus
    Ghorbani, Razieh
    Zakipour, Zahra
    Alemzadeh, Abbas
    Razi, Hooman
    PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS, 2020, 26 (07) : 1463 - 1476
  • [30] Genome-wide analysis of AP2/ERF transcription factors family in Brassica napus
    Razieh Ghorbani
    Zahra Zakipour
    Abbas Alemzadeh
    Hooman Razi
    Physiology and Molecular Biology of Plants, 2020, 26 : 1463 - 1476