Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean

被引:20
|
作者
Zhang, Dayong [1 ]
Wan, Qun [1 ]
He, Xiaolan [1 ]
Ning, Lihua [1 ]
Huang, Yihong [1 ]
Xu, Zhaolong [1 ]
Liu, Jia [1 ]
Shao, Hongbo [1 ,2 ]
机构
[1] Jiangsu Acad Agr Sci, Inst Biotechnol, Prov Key Lab Agrobiol, Nanjing 210014, Jiangsu, Peoples R China
[2] Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China
基金
美国国家科学基金会;
关键词
GmANKs; Bioinformatics analyses; GmANK39-like; Salt stress; Expression; Subcellular localization; PROTEIN; ARABIDOPSIS; EXPRESSION; PROTOPLASTS; SYSTEM;
D O I
10.1016/j.scitotenv.2016.06.078
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Ankyrin repeats (ANK) gene family are common in diverse organisms and play important roles in cell growth, development and response to environmental stresses. Recently, genome-wide identification and evolutionary analyses of the ANK gene family have been carried out in Arabidopsis, rice and maize. However, little is known about the ANK genes in the whole soybean genome. In this study, we described the identification and structural characterization of 162ANK genes in soybean (GmANK). Then, comprehensive bioinformatics analyses of GmANK genes family were performed including gene locus, phylogenetic, domain composition analysis, chromosomal localization and expression profiling. Domain composition analyses showed that GmANK proteins formed eleven subfamilies in soybean. In sicilo expression analysis of these GmANK genes demonstrated that GmANK genes showa diverse/various expression pattern, suggesting that functional diversification of GmANK genes family. Based on digital gene expression profile (DGEP) data between cultivated soybean and wild type under salt treatment, some GmANKs related to salt/drought response were investigated. Moreover, the expression pattern and subcellular localization of GmANK6 were performed. The results will provide important clues to explore ANK genes expression and function in future studies in soybean. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:899 / 909
页数:11
相关论文
共 50 条
  • [11] Genome-Wide Identification and Characterization of the Msr Gene Family in Alfalfa under Abiotic Stress
    Zhao, Xianglong
    Han, Xiao
    Lu, Xuran
    Yang, Haoyue
    Wang, Zeng-Yu
    Chai, Maofeng
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (11)
  • [12] Genome-wide identification of CBL gene family in Salvia miltiorrhiza and the characterization of SmCBL3 under salt stress
    Lv, Bingbing
    Wang, Tong
    Wang, Mei
    Gan, Hui
    Feng, Qiaoqiao
    Ma, Pengda
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2024, 207
  • [13] Genome-Wide Characterization and Expression Analysis of CAMTA Gene Family Under Salt Stress in Cucurbita moschata and Cucurbita maxima
    Yuan, Jingping
    Shen, Changwei
    Chen, Bihua
    Shen, Aimin
    Li, Xinzheng
    FRONTIERS IN GENETICS, 2021, 12
  • [14] The ankyrin repeat gene family in Capsicum spp: Genome-wide survey, characterization and gene expression profile
    Carlos Lopez-Ortiz
    Yadira Peña-Garcia
    Purushothaman Natarajan
    Menuka Bhandari
    Venkata Abburi
    Sudip Kumar Dutta
    Lav Yadav
    John Stommel
    Padma Nimmakayala
    Umesh K. Reddy
    Scientific Reports, 10
  • [15] The ankyrin repeat gene family in Capsicum spp: Genome-wide survey, characterization and gene expression profile
    Lopez-Ortiz, Carlos
    Pena-Garcia, Yadira
    Natarajan, Purushothaman
    Bhandari, Menuka
    Abburi, Venkata
    Dutta, Sudip Kumar
    Yadav, Lav
    Stommel, John
    Nimmakayala, Padma
    Reddy, Umesh K.
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [16] Genome-Wide Identification of SMXL Gene Family in Soybean and Expression Analysis of GmSMXLs under Shade Stress
    Zhang, Han
    Wang, Li
    Gao, Yang
    Guo, Yukai
    Zheng, Naiwen
    Xu, Xiangyao
    Xu, Mei
    Wang, Wenyan
    Liu, Chunyan
    Liu, Weiguo
    Yang, Wenyu
    PLANTS-BASEL, 2022, 11 (18):
  • [17] Genome-Wide Identification of the SRS Gene Family in Poplar and Expression Analysis Under Drought Stress and Salt Stress
    Yin, Zhihui
    Li, Haixia
    Li, Jing
    Guo, Chengbo
    Li, Zhenghua
    Zhang, Haifeng
    Wang, Hongmei
    Siqin, Tuya
    Sun, Peilin
    Wang, Yanmin
    Bai, Hui
    FORESTS, 2025, 16 (02):
  • [18] Genome-wide identification and characterization of the soybean SOD family during alkaline stress
    Lu, Wenxiu
    Duanmu, Huizi
    Qiao, Yanhua
    Jin, Xiaoxia
    Yu, Yang
    Yu, Lijie
    Chen, Chao
    PEERJ, 2020, 8
  • [19] Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family
    Jia, Bowei
    Wang, Yan
    Zhang, Dajian
    Li, Wanhong
    Cui, Hongli
    Jin, Jun
    Cai, Xiaoxi
    Shen, Yang
    Wu, Shengyang
    Guo, Yongxia
    Sun, Mingzhe
    Sun, Xiaoli
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, 22 (22)
  • [20] Genome-Wide Identification of the Pectate Lyase Gene Family in Potato and Expression Analysis under Salt Stress
    Wang, Zhiqi
    Liu, Tao
    Wu, Wenbo
    Shi, Wenting
    Shi, Jian
    Mo, Fengyan
    Du, Chong
    Wang, Chaonan
    Yang, Zhongmin
    PLANTS-BASEL, 2024, 13 (10):